HsaINT1010972 @ hg38
Intron Retention
Gene
ENSG00000149091 | DGKZ
Description
diacylglycerol kinase zeta [Source:HGNC Symbol;Acc:HGNC:2857]
Coordinates
chr11:46367291-46367747:+
Coord C1 exon
chr11:46367291-46367399
Coord A exon
chr11:46367400-46367651
Coord C2 exon
chr11:46367652-46367747
Length
252 bp
Sequences
Splice sites
5' ss Seq
AGCGTGAGT
5' ss Score
8.2
3' ss Seq
CAAGCCCATCCCGTGGCTAGGAG
3' ss Score
3.9
Exon sequences
Seq C1 exon
GAAAGCCATCACCAAGTCGGGCCTCCAGCACCTGGCCCCCCCTCCGCCCACCCCTGGGGCCCCGTGCAGCGAGTCAGAGCGGCAGATCCGGAGTACAGTGGACTGGAGC
Seq A exon
GTGAGTGCCTGAACACCCCTGGGTCCCAGACCCTCTGGGCTCTTGGCCAAGGCGCAGCTGGCGGGTGGAGGCACTAAAGGCAGCTGGGAGAGCCAAGCCTGGAAGGGTTGGGACAGTGGGGCAGACGGAACAGAGCAGGGTCGATCGGGGCGCTGGAGTGGGTTTGTCTTGGGAGAGGGCGGGTGGGCGGGGGCTGATGGGAGGGAGGGCTGGGCGGCCAGCGTGTGCTGAGCAAGCCCATCCCGTGGCTAG
Seq C2 exon
GAGTCAGCGACATATGGGGAGCACATCTGGTTCGAGACCAACGTGTCCGGGGACTTCTGCTACGTTGGGGAGCAGTACTGTGTAGCCAGGATGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000149091:ENST00000343674:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.692 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0013017=C1_1=PU(47.1=75.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAAGCCATCACCAAGTCGGG
R:
AGCATCCTGGCTACACAGTACT
Band lengths:
204-456
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains