RnoINT0047102 @ rn6
Intron Retention
Gene
ENSRNOG00000017737 | Dgkz
Description
diacylglycerol kinase zeta [Source:RGD Symbol;Acc:70929]
Coordinates
chr3:80854921-80855404:-
Coord C1 exon
chr3:80855296-80855404
Coord A exon
chr3:80855017-80855295
Coord C2 exon
chr3:80854921-80855016
Length
279 bp
Sequences
Splice sites
5' ss Seq
AGTGTGAGT
5' ss Score
6.96
3' ss Seq
CTGCTCATCCCACGGTTTAGGAG
3' ss Score
4.43
Exon sequences
Seq C1 exon
GAAAGCCATCACCAAGTCGGGCCTCCAGCACCTGGCACCCCCTCCTCCCACGCCTGGGGCCCCGTGCGGTGAATCTGAGCGGCAGATCCGGAGTACTGTGGACTGGAGT
Seq A exon
GTGAGTATCTGTGTACTAGGCAAGGCAGGAAGCGCAAATACTGCCTGGTGCCAGTTGCTGCTGGGCTCTGCTCCTCCCAAGCAATCAGAACCCACGGCTTGTGGGGCAACTGGGAGAAAAGCCCCATGAAGCAGCAGCCTGCGAGCCAGGCTTAACGGTGTTTATAAAACAGGAGAGGAGAGCAAATTGTGGTGGGTTAGAGCAGGCTTGAGAGGTGGATGATGGGAGGGTAGGGGTGGCGGGTGGGTAAGTGCTAAGCCTGCTCATCCCACGGTTTAG
Seq C2 exon
GAGTCAGCAGCGTATGGGGAGCACATCTGGTTTGAGACCAACGTGTCCGGAGATTTCTGCTATGTCGGGGAGCAGTACTGTGTAGCTAAGATGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017737:ENSRNOT00000024280:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.743 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0013017=C1_1=PU(42.1=75.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAAGCCATCACCAAGTCGGG
R:
AGCATCTTAGCTACACAGTACTGC
Band lengths:
204-483
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]