BtaINT0048714 @ bosTau6
Intron Retention
Gene
ENSBTAG00000013636 | DGKZ
Description
diacylglycerol kinase, zeta [Source:HGNC Symbol;Acc:HGNC:2857]
Coordinates
chr15:77237680-77238270:+
Coord C1 exon
chr15:77237680-77237788
Coord A exon
chr15:77237789-77238174
Coord C2 exon
chr15:77238175-77238270
Length
386 bp
Sequences
Splice sites
5' ss Seq
AGTGTGAGT
5' ss Score
6.96
3' ss Seq
ATGCTCGTCCCGTCCTCTAGGAG
3' ss Score
9.02
Exon sequences
Seq C1 exon
GAAAGCCATCACCAAGTCGGGCCTCCAGCACCTGGCACCCCCTCCTCCTGCTCCTGGGGCCCCGTGCAGCGAGCCTGAGCGGCAGATCCGGAGCACCGTGGACTGGAGT
Seq A exon
GTGAGTGGCCTGGAGCTGGGAGGGGTATATGGGGACCAGCTCCCCGCTGGGGGTAAGAAGTACTGCGGGCGGCTGCAAGGGAAGCCCATGGACCTGTGGGGTCAGGGCAGATCCAAGCCTTGAAGCCAACAGTGGTGAAAACAGGATGCAGCGAAGTAGATTGTGGGGGCTGGAGCAGGTTTGTCTTGGGAGAGGGACAGTAGATGGGGCGCAGCAGGTCTGCACTAACCAGGAGGCCACGTTTGAGCCAAGCCTTAAGCCCAACAGACAGCCGGGGGGAAAGCAGGATGCAGGGAGGTAGATTGTGAGGGCTGGAGCAGGTTTGTCTTGGGAGAGGGTTGGGAGCAGAGCAGGCGTGCACCGAGCATGCTCGTCCCGTCCTCTAG
Seq C2 exon
GAGTCAGCGACGTATGGGGAACACATCTGGTTTGAGACCAACGTGTCCGGGGACTTCTGCTACGTCGGAGAGCAGTACTGCGTCGCCAAGATGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013636:ENSBTAT00000018128:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.595 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAAGCCATCACCAAGTCGGG
R:
CAGCATCTTGGCGACGCAG
Band lengths:
205-591
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development