HsaINT0047420 @ hg19
Intron Retention
Gene
ENSG00000149091 | DGKZ
Description
diacylglycerol kinase, zeta [Source:HGNC Symbol;Acc:2857]
Coordinates
chr11:46397878-46398114:+
Coord C1 exon
chr11:46397878-46397947
Coord A exon
chr11:46397948-46398073
Coord C2 exon
chr11:46398074-46398114
Length
126 bp
Sequences
Splice sites
5' ss Seq
ACGGTGAGT
5' ss Score
11.45
3' ss Seq
AGCTGCCCTCTCTCCCACAGCCA
3' ss Score
9.75
Exon sequences
Seq C1 exon
GAGCCCGATGGTGCTGGAGCCAAGTCCCCGACATGCCAGAAACTGTCCCCCAAGTGGTGCTTCCTGGACG
Seq A exon
GTGAGTCTACTCCCAGGGTGCCAAGCTGTTTCGTGTTCCCTCCCTAGGGGATCCCAGGTAGGGGCAGCAGAGGACCTGGGCCTGGACATGGCACTCCCTGATCCTCAGCTGCCCTCTCTCCCACAG
Seq C2 exon
CCACCACTGCCAGCCGCTTCTACAGGATCGACCGAGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000149091-DGKZ:NM_003646:23
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.417 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCCCGATGGTGCTGGAG
R:
GGCTCGGTCGATCCTGTAGAA
Band lengths:
108-234
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)