GgaINT0054702 @ galGal3
Intron Retention
Gene
ENSGALG00000008380 | DGKZ
Description
NA
Coordinates
chr5:25813182-25814640:-
Coord C1 exon
chr5:25814571-25814640
Coord A exon
chr5:25813223-25814570
Coord C2 exon
chr5:25813182-25813222
Length
1348 bp
Sequences
Splice sites
5' ss Seq
ACTGTGAGT
5' ss Score
7.94
3' ss Seq
ATTCCGTCCCTGTCTTGCAGCAA
3' ss Score
10.51
Exon sequences
Seq C1 exon
GAAGGAGATGGAGCCAAACCGAAGACATTGTCATCCCAGAAACTGTCACCAAAATGGTGTTTCCTGGACT
Seq A exon
GTGAGTATCATCATCTGCTGGGAGTGCTTTGTGCATGAATCTGGAGTGTGACAAGACAGACCTTTAGTGGCAAGCCACTGAGAGCCGTGTGGGACTTGAGACTCAAGGATGTTGGGATCCTTGCAGCCAAGTTCAGCAGGCCTTTGCCCAGTCTGTGCCTCTGGCAGCTAACCACAAGTAGAGTGAGGAGCCTGCCAGGCAAGGGGTATCTGCTGCTCTCCAGCCCCGGAGCTGAACACGGCTCTGCAGGGTATGCTCAGTCTCGTCAGGACTGGTGGGGTTGCTCTTCTGTGGTGTGCAGGCAGGGGGCCCCCATGCTCTAGAAAGCTGGGAGTGAGACATCACCTTGTGTATCCTGGAGGTATTGGAACAGTTTCCCCGCTGGTTTCCAGCTGCTTCTCCCCATTCTGGAAACAGCTTTCTTCTCTCCCTCTGCCTTCACTGACCTGGAAGTCAGAGCTCTCCCTGTGTATCTGGAAGAGGGCTGAGATAAGTGACTTCCACTGACACTTCATCTCCCTGACTTGCAAGAGGAGTTTCTGACTGCCAGCAGTAGGGCTTAGGGCAGAACAAAGCTGTCCACCTCCTGTGTACTCAGGGCAGCACACAACTGCTTAGCCCTGCATGTAGGAGGGCTTAACCAGGGCTAGGGAGAAAGCCGAGGGCAAGAGCCAGCCCTAGCCTAGACCGGGAAGAACAGACCTGTCTCTGGAGCTGGCAGTCACTGCTGATCAGGTAAAGGCCTTCTTGGATATGAAGCCGATATTTCAGAGGTCCTGGCAGGTCACCTGGGAAAATTGTCCTTTCTTCTCTCAACGGAGATGCTGCTGTATTTCCCCTGAGGTGTCAGGTCTCCAGCATGTGTGTTGGTCCCTCTCACCCTGCAAGGGACATCAGGTACAGCCAGAGACTGCAATATGGGCCCGGAAAGCCTCATACTAGCCTGAAAGGATGTTGCTTTTCCCTTGGGGCCTTTCAGACCCTTCACGAGGGGCTGCTGGGATGACTGCTCCCAGGTGTCCCTCCTAGGACCGCTTTCCCTCCTCCAGCCAGTCTCCCAGCAGCAGGTTCTGAGCTCAGGAAAATGTGTCAGGAAAGGAGCCAGCGCCTCATTCAAGACAGCACAGGCTCGTTAAAGCAGCTGAATTACAGGCCTTCAGCAGCAGCTCCATGGCTGTAAATCTCCAGCCAGGACAGAATAGACGGAGCTCTTTCACTCCTCTAATCCGATCTGGGCAATCCCCACTCAGTTTGCAAAGAGAATTCCCTGGGCCCCCAAGGGTCCCACTGCAGCAACCTCGCCTTACAGCCAAGAATCACTCTGTCTGATTCCGTCCCTGTCTTGCAG
Seq C2 exon
CAACCACAGCAGATCGGTTCTACAGGATAGATCGTGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008380:ENSGALT00000038374:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.354 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]