RnoINT0047106 @ rn6
Intron Retention
Gene
ENSRNOG00000017737 | Dgkz
Description
diacylglycerol kinase zeta [Source:RGD Symbol;Acc:70929]
Coordinates
chr3:80847747-80847999:-
Coord C1 exon
chr3:80847930-80847999
Coord A exon
chr3:80847788-80847929
Coord C2 exon
chr3:80847747-80847787
Length
142 bp
Sequences
Splice sites
5' ss Seq
ACGGTGAGT
5' ss Score
11.45
3' ss Seq
GCCAGCCGTCTCATCTACAGCCA
3' ss Score
6
Exon sequences
Seq C1 exon
GAGCCCGATGGGGCTGGAGCCAAGTCCCCCATGTGCCACCCACTGTCCTCCAAGTGGTGTTTCCTGGACG
Seq A exon
GTGAGTCTGCCGAGAAGGGTCCTTTCTAGGCCATCCTAGGCCGTCCGGCTAGTGCTCCTCTGGGGGAACCTGGGATAATTAACAGAAGAGTTGGGCTGGGGTAAGGACAGACCTCATTCTCAGCCAGCCGTCTCATCTACAG
Seq C2 exon
CCACCACTGCCAGCCGCTTCTACAGGATCGACAGGGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017737:ENSRNOT00000024280:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.417 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGAGCCAAGTCCCCCAT
R:
CTGGGCCCTGTCGATCCTG
Band lengths:
98-240
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]