HsaINT1010976 @ hg38
Intron Retention
Gene
ENSG00000149091 | DGKZ
Description
diacylglycerol kinase zeta [Source:HGNC Symbol;Acc:HGNC:2857]
Coordinates
chr11:46376328-46376564:+
Coord C1 exon
chr11:46376328-46376397
Coord A exon
chr11:46376398-46376523
Coord C2 exon
chr11:46376524-46376564
Length
126 bp
Sequences
Splice sites
5' ss Seq
ACGGTGAGT
5' ss Score
11.45
3' ss Seq
AGCTGCCCTCTCTCCCACAGCCA
3' ss Score
9.75
Exon sequences
Seq C1 exon
GAGCCCGATGGTGCTGGAGCCAAGTCCCCGACATGCCAGAAACTGTCCCCCAAGTGGTGCTTCCTGGACG
Seq A exon
GTGAGTCTACTCCCAGGGTGCCAAGCTGTTTCGTGTTCCCTCCCTAGGGGATCCCAGGTAGGGGCAGCAGAGGACCTGGGCCTGGACATGGCACTCCCTGATCCTCAGCTGCCCTCTCTCCCACAG
Seq C2 exon
CCACCACTGCCAGCCGCTTCTACAGGATCGACCGAGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000149091:ENST00000343674:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.417 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCCCGATGGTGCTGGAG
R:
GGCTCGGTCGATCCTGTAGAA
Band lengths:
108-234
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains