MmuINT0048920 @ mm9
Intron Retention
Gene
ENSMUSG00000040479 | Dgkz
Description
diacylglycerol kinase zeta [Source:MGI Symbol;Acc:MGI:1278339]
Coordinates
chr2:91776682-91776928:-
Coord C1 exon
chr2:91776859-91776928
Coord A exon
chr2:91776723-91776858
Coord C2 exon
chr2:91776682-91776722
Length
136 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
3' ss Seq
CCTCATACTCTCTTCTATAGCCA
3' ss Score
7.04
Exon sequences
Seq C1 exon
GAGCCCGATGGGGCTGGAGCCAAGTCCCCGATGTGCCACCAACTCTCCTCCAAGTGGTGTTTCCTGGATG
Seq A exon
GTGAGTCCGACATGAAGGGTCCTTTCTAGGTAGGGCTAGGCCGTCCTGCTGGTGGGGGAACCTGGGCTGATTTAACAGAAGAGCTGGGCTGGGATAAGGACAGACCTCATACTCAGCCTCATACTCTCTTCTATAG
Seq C2 exon
CCACCACTGCCAGCCGCTTCTACAGGATCGACAGAGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040479-Dgkz:NM_138306:23
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.375 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGAGCCAAGTCCCCGAT
R:
CTGGGCTCTGTCGATCCTGTA
Band lengths:
98-234
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: