DreINT0056581 @ danRer10
Intron Retention
Gene
ENSDARG00000076025 | dgkzb
Description
diacylglycerol kinase, zeta b [Source:ZFIN;Acc:ZDB-GENE-111104-4]
Coordinates
chr25:7724616-7726262:+
Coord C1 exon
chr25:7724616-7724685
Coord A exon
chr25:7724686-7726221
Coord C2 exon
chr25:7726222-7726262
Length
1536 bp
Sequences
Splice sites
5' ss Seq
ACTGTAAGT
5' ss Score
8.59
3' ss Seq
TTTGTTTGTTTGTTTCCCAGGTA
3' ss Score
10.05
Exon sequences
Seq C1 exon
GAGGGGGATGGGATGAATACAGACACACTGCACATGCCAAAGCTTTCACCAAAATGGTGCTTCCTGGACT
Seq A exon
GTAAGTAAAACATTTTACGCCTTTAAGAAACAAAATCAAAGACAGAATTTGTGTTTCGGTAACACTTTAGTATAGGTCACAATTCATGTTATTAACTACTGGCTTATTATTACCAGCCTATATGAACTGTTCATTAGTAGTCATAAATGCAGATCTTGTTCTGCATCCCTAAGCCTACCCAACACCTAAACCAACTTACTACACTGTCAAAAATGCAATGACAAAATATCAAGGCAACAAATATTTTTGTCACCTTAATATAATAGGTTAATCAGGTTTCAACTAAATGTTTTAGAGATGCAGTATGTAAGTTTGACACCCAGTGGTTGAAATAGGTATTGCATTCCTGAATCAAATCAAACACACGCATAGGTTGCCAGATTGAGGATCAACAGGAGCAAGTCTGATGAATGAGCCTAAAGGCTGAATTAAATCGTGTTCTATATAAAAGCAACGGCACGCGATAGAAGGAATATTCTCAATATTAAAAGGAGTTTTTGTTCTAACCAACATCTCAAATTGATATAGTAGAAACGGCTTCTATTTCTTGAAGCTGAACAACAGAAAACTGCCAATGGTCACCTCATGTGCTTTCTAGTGTTAAATGCAAATAATATGAGTTTCAATGCCATTTTACACCACATTTATTGCCAAACTACTGAAAGCAGCAGCAAAAAGTTCACCTCAGATCTTGAAAATAAACTGCTTAAAACTGAACTTTAGAACTGTGACTGTGTAAACCAACACATATCAGTGATTCGGCATGTAGATTTGATAATGTTAAAGAGGTTTAATATGCATTTATTAGATTATAAACCTTTCCATTTTGTGAGTGCTGTATTTAAACTTGTCTGGTTTCGTCTCGTGCAAACAGCCAAATTGCTTAACACTGCTAATATCGTCAAGTAGCGTGTTGTTAGGACACTGGGTTACAATGTAACCTGCTCACCTAAGGTTTACGCTCGTAATATTTTTATAATTTGCTAATTAATAACCACATAATGTGGAATTCTGAATCTGCGTCTCATTTTGGAGTCTGCTACTGTCCACCGGAGGTCGCATTTCGGTCACGGCCGCCTGCTTTGAGAGCCTTTCTGAATGAATGTGTTTTTCCAACAAGGCAACCCGAGGTGCTGTAATATAATTGGCTAAACTGCGAGGTGGGTTTAAAGAACCAAAACAAAAGACAGCGTTCTGGCACAAAACGCACATTTGTAAAGCAGAATATTGTTTAACGTAACGTTTTTAGTCCGTTGGATTGATATAAGTGGAGATGAATAGAAAAGTTAGTTTGATTTAACAAAAAAATTGAAGGTAGCTAGAATTTACAGTGTAACTAATAATAAAAAATAGGTAACTAGTATATTAAGCTAGTAGTGTTCGTTAATACCATGAATTGTTTACTAAAGTGTTTTCAAAAGTGTGATAATGATGTATAATTAATGTGAAATTGTATCTGAGATTCTTCAGTTTTGACCTTTCCACTAGTTTTAAGTGCCACAAACAAATCTTTCTCTTTGTTTGTTTGTTTCCCAG
Seq C2 exon
GTACAACTGCAGATCGTTTCTACCGAATAGATCGTGGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000076025:ENSDART00000155016:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.417 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]