BtaINT0048716 @ bosTau6
Intron Retention
Gene
ENSBTAG00000013636 | DGKZ
Description
diacylglycerol kinase, zeta [Source:HGNC Symbol;Acc:HGNC:2857]
Coordinates
chr15:77245463-77245690:+
Coord C1 exon
chr15:77245463-77245532
Coord A exon
chr15:77245533-77245649
Coord C2 exon
chr15:77245650-77245690
Length
117 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
3' ss Seq
AGCTAGCCCTCTCCCCACAGCCA
3' ss Score
6.67
Exon sequences
Seq C1 exon
GAGCCCGAAGGTGCTGGAGCCAAGTCCCCGATGTGCCAGAAACTGTCCCCCAAGTGGTGCTTCCTCGATG
Seq A exon
GTGAGTGGCCCCTGAAGGGCCGGGTCCCGCCCCGTCCCTTGGCAGTCCTGGGTGGGGCGGCTGGAGACCTGGGCCTGGATAGGGGGCCACCTTCCTCAGCTAGCCCTCTCCCCACAG
Seq C2 exon
CCACCACTGCCAGCCGCTTCTACAGAATCGACAGGGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013636:ENSBTAT00000018128:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.375 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAAGGTGCTGGAGCCAAG
R:
CTGGGCCCTGTCGATTCTGTA
Band lengths:
106-223
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development