HsaINT0047427 @ hg19
Intron Retention
Gene
ENSG00000149091 | DGKZ
Description
diacylglycerol kinase, zeta [Source:HGNC Symbol;Acc:2857]
Coordinates
chr11:46389202-46389629:+
Coord C1 exon
chr11:46389202-46389297
Coord A exon
chr11:46389298-46389551
Coord C2 exon
chr11:46389552-46389629
Length
254 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
CCTCTCTTCCTGTCCTGCAGCAG
3' ss Score
9.95
Exon sequences
Seq C1 exon
GAGTCAGCGACATATGGGGAGCACATCTGGTTCGAGACCAACGTGTCCGGGGACTTCTGCTACGTTGGGGAGCAGTACTGTGTAGCCAGGATGCTG
Seq A exon
GTGAGTGCTCGTAGGGGCACGCCGCCCCCTGCTGGTGGAGCCAGTAGCCGCAGCCCTTCCGGGAACGTGGGATTGAGCCCGCTCCCTGGCACCCCTGCTGTGGGCCGCCCCAGGATGGTGAGGGGTGCAGGGGCTTTGTCCGGATGCCAGGACTGGGGCTTCCCAGTGCACACAAAGGGCAGCTGTGCTGGGGCAGGCAGCCTCCGAGATAGACTTACCTGGTGCCTCAGGGGCCCTCTCTTCCTGTCCTGCAG
Seq C2 exon
CAGAAGTCAGTGTCTCGAAGAAAGTGCGCAGCCTGCAAGATTGTGGTGCACACGCCCTGCATCGAGCAGCTGGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000149091-DGKZ:NM_003646:3
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF138781=zf-C2H2_3=PU(0.1=0.0)
A:
NA
C2:
PF138781=zf-C2H2_3=FE(87.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTCAGCGACATATGGGGAGC
R:
CTTCTCCAGCTGCTCGATGC
Band lengths:
173-427
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)