GgaINT0054682 @ galGal3
Intron Retention
Gene
ENSGALG00000008380 | DGKZ
Description
NA
Coordinates
chr5:25824163-25825166:-
Coord C1 exon
chr5:25825071-25825166
Coord A exon
chr5:25824241-25825070
Coord C2 exon
chr5:25824163-25824240
Length
830 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
3' ss Seq
CCCATTTTCTCATCCTCCAGCAA
3' ss Score
8.2
Exon sequences
Seq C1 exon
GAGACTGCAGTCTATGGGGAGCACATCTGGTTTGAGACCAATGTCTCTGGGGATTTCTGCTACGTTGGGGAGCAGAACTGCATGGCCAAGCTGCTG
Seq A exon
GTAAGTCGCCTGGGGTCACCCGCATCCCCTGCGTGCTCCTCAGCTGCGGGCTGTGCTGCCACCCGGCGGAGAGACCACAAAGGAAGGCCCTGGTGCTGGGAGAAGTGAGGGCCTGGGGAGCTGGCAAGGGGAAGAGGACTTGTTCCTCCGTCTCTGTGTGCTGCAGCGCTGCCAGTGCTGCTATTCAATTTGCAGCAGGAGCCCAGTGCAAGGCTACACACAGCTGCAAGTCACTGCAGGGAGAGGTTGTTGGGATTCCACATGCTTAGCGGAAGAAGCTGAATCCAGCTTCTCTGGAAAAGCTTTTCAACAGAGAGAAAGAATGAGCAGTGGGGATCCAGGCCTGCTGTCTCCTGTCCCTGCATGCTGTACTGGAGCCCCAACAGGCCTTGCAGCAGCATAGCAGCACTTCTCTCTCCCTGCTTGCAGACTCAATCCTGCTCGTGGTGCTGGATGTGCAGCACTGATGCCACCGTGTGCCTGCCCCCTAGCTTTACACTGCCACTGGATGAGCCAAAGCTCTGGGCCAGACCGTGAGAGTGCTTCCCAAAGGATGTCCTGTGTTGTTCTCTGTCAGTGTCAGAAGAGGCCAAGGACTGCTTTGGCAGTGGGAGAGCACCTCCCTGTTGTGCTGCAGACTCAAGAGCATCTGCTCAAGGCACATGCTTACATCCTGTTACTGGCAAGGTGTCTAGAATGTATGAAACTCGTGTAGGACTTGTTTTTTACATCCTGAAATATATGAAGGAAGTGTGAGAAGTGGTTGAGTTTCTGGCCTCCTTACCTGCTGTTCACATGCATGTTTTTCCTCCCATTTTCTCATCCTCCAG
Seq C2 exon
CAAAAACCTCTCTCCAGGCGTAAGTGTGCAGCATGCAAGATCATAGTGCATACACCCTGCATAGAACAGCTGGAGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008380:ENSGALT00000038374:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0013017=C1_1=PU(42.1=75.0)
A:
NA
C2:
PF0013017=C1_1=FE(43.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]