MmuINT0048927 @ mm9
Intron Retention
Gene
ENSMUSG00000040479 | Dgkz
Description
diacylglycerol kinase zeta [Source:MGI Symbol;Acc:MGI:1278339]
Coordinates
chr2:91784179-91784626:-
Coord C1 exon
chr2:91784531-91784626
Coord A exon
chr2:91784257-91784530
Coord C2 exon
chr2:91784179-91784256
Length
274 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
TCCCTCTTTCTGTCCTACAGCCG
3' ss Score
10.8
Exon sequences
Seq C1 exon
GAGTCAGCAGTGTATGGGGAGCACATCTGGTTTGAGACCAACGTGTCCGGTGACTTCTGCTATGTCGGGGAGCAGCACTGTGTAGCTAAGATGCTG
Seq A exon
GTGAGTGAGCTTGGTGGGACCTGCTGCCCCCTGGTGGTGTAGTGGGGTCTAGACCCGCAAGGCAACAACTGCAGTCCTTGGTGGGCACTGCTCCTATCTGGGTGGGTGTACTTGCTGTGGGCTGCTCCAGGGGGAGGGGGAGGGGGCTTTGTCTGATGACAGGTACTGGGACTGGAACCCCATATAGAGAAAACATGTTATTTGGTTCCCCTGAGATGATATCTAGGGTGGAGTTACCTGATGTCTCAGGGCCTTCCCTCTTTCTGTCCTACAG
Seq C2 exon
CCGAAGTCAGCGCCCAGAAAAAAGTGTGCAGCCTGTAAGATCGTGGTGCATACCCAATGCATTAAGCAGCTGGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040479-Dgkz:NM_138306:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.173 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0013017=C1_1=PU(42.1=75.0)
A:
NA
C2:
PF0013017=C1_1=FE(43.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTCAGCAGTGTATGGGGAG
R:
TATGCACCACGATCTTACAGGC
Band lengths:
148-422
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: