BtaINT0048722 @ bosTau6
Intron Retention
Gene
ENSBTAG00000013636 | DGKZ
Description
diacylglycerol kinase, zeta [Source:HGNC Symbol;Acc:HGNC:2857]
Coordinates
chr15:77238175-77238614:+
Coord C1 exon
chr15:77238175-77238270
Coord A exon
chr15:77238271-77238536
Coord C2 exon
chr15:77238537-77238614
Length
266 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
GGACCTTCTGTTTCCCGCAGCAG
3' ss Score
8.32
Exon sequences
Seq C1 exon
GAGTCAGCGACGTATGGGGAACACATCTGGTTTGAGACCAACGTGTCCGGGGACTTCTGCTACGTCGGAGAGCAGTACTGCGTCGCCAAGATGCTG
Seq A exon
GTGAGTGAGCGCGGTGCGGCAGGCCGCCCCCTGGTGGTGGAGCCGGGTCTCGAGCCCTGTAGGCAGGCACTTCCAGGGGAAGGTGGGAATGAGGCTCTCGCCTGAGCCGCCCTGCAGGGGGCTGCCCCCCGGTGGCCAGAGGAATGGGATTGGGTCCTGAAGCCGGGACGGGGGCTCGACAATGCTCTCCCAGAGCAGCTGTGCCGGGGCAGGCCGTGGGGTGGCACCCTGAGGCCGGTGCCTCAGGGACCTTCTGTTTCCCGCAG
Seq C2 exon
CAGAAATCAGTGTCCCGGAGAAAGTGTGCAGCCTGCAAGATTGTGGTCCACACACCCTGCATTGAGCAGCTCGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013636:ENSBTAT00000018128:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTCAGCGACGTATGGGGAA
R:
CTTCTCGAGCTGCTCAATGC
Band lengths:
174-440
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development