RnoINT0047113 @ rn6
Intron Retention
Gene
ENSRNOG00000017737 | Dgkz
Description
diacylglycerol kinase zeta [Source:RGD Symbol;Acc:70929]
Coordinates
chr3:80854573-80855016:-
Coord C1 exon
chr3:80854921-80855016
Coord A exon
chr3:80854651-80854920
Coord C2 exon
chr3:80854573-80854650
Length
270 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
CCCCTCTTTCTGTCTTGCAGCCG
3' ss Score
12.06
Exon sequences
Seq C1 exon
GAGTCAGCAGCGTATGGGGAGCACATCTGGTTTGAGACCAACGTGTCCGGAGATTTCTGCTATGTCGGGGAGCAGTACTGTGTAGCTAAGATGCTG
Seq A exon
GTGAGTGAGCTCCGTGGGACCTGCTGCCCCCTGGTGGTGTAGCAGAGTCTAGACCCGCAAGGCAGCAACTGCAGCCCTTGGTGGGCACTGCTCCTACCTGGTTGCACTTGCGGTGGGCTGCTCCAGGGTGAGGAGAAGAGGGTTTTGTCTGATGACAAGTACTGGGACTGGAACCCCATACATAAAAAACAAGGTATTTGGTCTCCCTGAGATGATATCTAGGGTGGTGTTACCTGATGTCGCAGGCCCTCCCCTCTTTCTGTCTTGCAG
Seq C2 exon
CCGAAGTCAGCGCCCAGAAGAAAGTGTGCAGCCTGTAAGATCGTGGTGCATACCCCTTGCATCGGGCAGCTGGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017737:ENSRNOT00000024280:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0013017=C1_1=PU(42.1=75.0)
A:
NA
C2:
PF0013017=C1_1=FE(43.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTCAGCAGCGTATGGGGAG
R:
CTTTTCCAGCTGCCCGATGC
Band lengths:
174-444
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]