HsaINT1010983 @ hg38
Intron Retention
Gene
ENSG00000149091 | DGKZ
Description
diacylglycerol kinase zeta [Source:HGNC Symbol;Acc:HGNC:2857]
Coordinates
chr11:46367652-46368079:+
Coord C1 exon
chr11:46367652-46367747
Coord A exon
chr11:46367748-46368004
Coord C2 exon
chr11:46368005-46368079
Length
257 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
CTCTTCCTGTCCTGCAGCAGAAG
3' ss Score
4.67
Exon sequences
Seq C1 exon
GAGTCAGCGACATATGGGGAGCACATCTGGTTCGAGACCAACGTGTCCGGGGACTTCTGCTACGTTGGGGAGCAGTACTGTGTAGCCAGGATGCTG
Seq A exon
GTGAGTGCTCGTAGGGGCACGCCGCCCCCTGCTGGTGGAGCCAGTAGCCGCAGCCCTTCCGGGAACGTGGGATTGAGCCCGCTCCCTGGCACCCCTGCTGTGGGCCGCCCCAGGATGGTGAGGGGTGCAGGGGCTTTGTCCGGATGCCAGGACTGGGGCTTCCCAGTGCACACAAAGGGCAGCTGTGCTGGGGCAGGCAGCCTCCGAGATAGACTTACCTGGTGCCTCAGGGGCCCTCTCTTCCTGTCCTGCAGCAG
Seq C2 exon
AAGTCAGTGTCTCGAAGAAAGTGCGCAGCCTGCAAGATTGTGGTGCACACGCCCTGCATCGAGCAGCTGGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000149091:ENST00000343674:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0013017=C1_1=PU(47.1=75.0)
A:
NA
C2:
PF0013017=C1_1=FE(47.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGACATATGGGGAGCACATC
R:
CTTCTCCAGCTGCTCGATGC
Band lengths:
165-422
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains