HsaINT0047432 @ hg19
Intron Retention
Gene
ENSG00000149091 | DGKZ
Description
diacylglycerol kinase, zeta [Source:HGNC Symbol;Acc:2857]
Coordinates
chr11:46393037-46393325:+
Coord C1 exon
chr11:46393037-46393153
Coord A exon
chr11:46393154-46393253
Coord C2 exon
chr11:46393254-46393325
Length
100 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
CACCCCTGCTTCCCTTGCAGAAT
3' ss Score
11.85
Exon sequences
Seq C1 exon
TACCACAGCAAGGTGTCCTGCTTCATGCTGCAGCAGATCGAGGAGCCGTGCTCGCTGGGGGTCCACGCAGCCGTGGTCATCCCGCCCACCTGGATCCTCCGCGCCCGGAGGCCCCAG
Seq A exon
GTGAGTACTGCCTGCACCCTTGATGCCCCGTACGCACTTGGGGTCTGCCAGCTACCCCAGCCTGCCCACCTCGTCACCAACACCCCTGCTTCCCTTGCAG
Seq C2 exon
AATACTCTGAAAGCAAGCAAGAAGAAGAAGAGGGCATCCTTCAAGAGGAAGTCCAGCAAGAAAGGGCCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000149091-DGKZ:NM_003646:8
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.051 A=NA C2=0.792
Domain overlap (PFAM):
C1:
PF0013017=C1_1=PD(39.5=43.6)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACAGCAAGGTGTCCTGCTTC
R:
CTCAGGCCCTTTCTTGCTGG
Band lengths:
186-286
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)