GgaINT0054687 @ galGal3
Intron Retention
Gene
ENSGALG00000008380 | DGKZ
Description
NA
Coordinates
chr5:25821232-25821506:-
Coord C1 exon
chr5:25821390-25821506
Coord A exon
chr5:25821304-25821389
Coord C2 exon
chr5:25821232-25821303
Length
86 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
TTGGGTTTCTTTCTTTTCAGAAT
3' ss Score
9.69
Exon sequences
Seq C1 exon
TATCACAGCAAAGTGTCATGTTTCATGCTGCAACACATCGAAGAGCCCTGCTCATTAGGGGCTCACGCTGCTGTCGTCGTTCCTCCCACCTGGATTTTGCGGGTCCGACGGCCCCAG
Seq A exon
GTAAGGCATATCAGTTCTTGTGTTTTTGCACGGATCCTGCTTACTCAGCAGTTCCTCATATAGTGTTTGGGTTTCTTTCTTTTCAG
Seq C2 exon
AATCCAATGAAATCCAGTAAGAAAAAGAAGAGGACATCATTCAAGCGAAAATCCAGCAAAAAGGGTGCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008380:ENSGALT00000038374:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.077 A=NA C2=0.875
Domain overlap (PFAM):
C1:
PF0013017=C1_1=PD(28.3=43.6)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCATGTTTCATGCTGCAACACA
R:
ACCCTTTTTGCTGGATTTTCGC
Band lengths:
169-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]