RnoINT0047119 @ rn6
Intron Retention
Gene
ENSRNOG00000017737 | Dgkz
Description
diacylglycerol kinase zeta [Source:RGD Symbol;Acc:70929]
Coordinates
chr3:80851775-80852048:-
Coord C1 exon
chr3:80851932-80852048
Coord A exon
chr3:80851847-80851931
Coord C2 exon
chr3:80851775-80851846
Length
85 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
CATCCTTCATTCCTTTGCAGAAC
3' ss Score
10.9
Exon sequences
Seq C1 exon
TACCACAGCAAGGTGTCCTGCTTCATGCTGCAGCAGATTGAGGAGCCCTGTTCCCTAGGGGTGCATGCAGCCGTGGTCATCCCACCCACCTGGATCCTACGGGCCCGGAGGCCCCAG
Seq A exon
GTGAGGCTTTCCTTTTCTCTTCACACATTCCCCCATGGGACCTATCAGTCACACCCAGTCACCCACATCCTTCATTCCTTTGCAG
Seq C2 exon
AACACCCTCAAGGCCAGCAAGAAGAAAAAGAGAGCATCCTTCAAAAGGAGATCCAGTAAGAAAGGACCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017737:ENSRNOT00000024280:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.051 A=NA C2=0.792
Domain overlap (PFAM):
C1:
PF0013017=C1_1=PD(28.3=43.6)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGTGTCCTGCTTCATGCTG
R:
AGGTCCTTTCTTACTGGATCTCCT
Band lengths:
177-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]