HsaINT1010987 @ hg38
Intron Retention
Gene
ENSG00000149091 | DGKZ
Description
diacylglycerol kinase zeta [Source:HGNC Symbol;Acc:HGNC:2857]
Coordinates
chr11:46371487-46371775:+
Coord C1 exon
chr11:46371487-46371603
Coord A exon
chr11:46371604-46371703
Coord C2 exon
chr11:46371704-46371775
Length
100 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
CACCCCTGCTTCCCTTGCAGAAT
3' ss Score
11.85
Exon sequences
Seq C1 exon
TACCACAGCAAGGTGTCCTGCTTCATGCTGCAGCAGATCGAGGAGCCGTGCTCGCTGGGGGTCCACGCAGCCGTGGTCATCCCGCCCACCTGGATCCTCCGCGCCCGGAGGCCCCAG
Seq A exon
GTGAGTACTGCCTGCACCCTTGATGCCCCGTACGCACTTGGGGTCTGCCAGCTACCCCAGCCTGCCCACCTCGTCACCAACACCCCTGCTTCCCTTGCAG
Seq C2 exon
AATACTCTGAAAGCAAGCAAGAAGAAGAAGAGGGCATCCTTCAAGAGGAAGTCCAGCAAGAAAGGGCCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000149091:ENST00000343674:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.047 A=NA C2=0.787
Domain overlap (PFAM):
C1:
PF0013017=C1_1=PD(39.5=43.6)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACAGCAAGGTGTCCTGCTTC
R:
CTCAGGCCCTTTCTTGCTGG
Band lengths:
186-286
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains