BtaINT0048727 @ bosTau6
Intron Retention
Gene
ENSBTAG00000013636 | DGKZ
Description
diacylglycerol kinase, zeta [Source:HGNC Symbol;Acc:HGNC:2857]
Coordinates
chr15:77241023-77241308:+
Coord C1 exon
chr15:77241023-77241139
Coord A exon
chr15:77241140-77241236
Coord C2 exon
chr15:77241237-77241308
Length
97 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
CACCTCCACTTCCCTCGCAGAAC
3' ss Score
9.61
Exon sequences
Seq C1 exon
TACCACAGCAAGGTGTCCTGCTTCATGCTGCAGCAGATCGAGGAGCCGTGCTCCCTGGGGGTCCACGCCGCTGTGGTCATCCCCCCCACCTGGATCCTCCGGGCCCGCAGGCCCCAG
Seq A exon
GTGAGTCCCACCTGCGCCAGGAAACCCTAACCCCCAGGGTCTGCCAGCCACCCTAGCCCCAACCATCTTGTCACCCACACCTCCACTTCCCTCGCAG
Seq C2 exon
AACACCCTCAAAGCCAGCAAGAAGAAAAAAAGAGCATCCTTCAAGAGGAAGTCTAGCAAGAAAGGGCCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013636:ENSBTAT00000018128:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.051 A=NA C2=0.792
Domain overlap (PFAM):
C1:
PF0013017=C1_1=PD(28.3=43.6)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGTGTCCTGCTTCATGCTG
R:
GGCCCTTTCTTGCTAGACTTCC
Band lengths:
176-273
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development