DreINT0056565 @ danRer10
Intron Retention
Gene
ENSDARG00000014439 | dgkza
Description
diacylglycerol kinase, zeta a [Source:ZFIN;Acc:ZDB-GENE-111104-3]
Coordinates
chr7:38817825-38818281:+
Coord C1 exon
chr7:38817825-38817941
Coord A exon
chr7:38817942-38818209
Coord C2 exon
chr7:38818210-38818281
Length
268 bp
Sequences
Splice sites
5' ss Seq
CAGGTACAC
5' ss Score
7.29
3' ss Seq
TGTTTTTTTTTTTATCATAGTCC
3' ss Score
7.76
Exon sequences
Seq C1 exon
TATCATAATAAGGTGACATGCTTTATGCTGCAGCAGATAGAAGAACCATGTTCATTAGGAGCTCATGCCGCTGTAATAGTACCTCCTACTTGGATCATACGGGTTCGCCGACCTCAG
Seq A exon
GTACACACACACACACACACACAATACACACTGTTAGGATTACTGCTTAAACAGGTGTATGAGAACAATCCACAAATTGAATTAGATGATTGAATTAATGTGGTTACATTGTAAATTACTGAGCAGTGCTATTCTGTGGCAAAATTGGATGTAAACTTTTAATGCAATCGATCATGCACAATCCGTAAGGCATTGCTAGTTTTCCATTGCATTTTTTGTTATGTTTTTAAAATGTTATTATCTTGTATTGTTTTTTTTTTTATCATAG
Seq C2 exon
TCCTCACTAAAGTCAAGCAAAAAGAAAAAACGGACATCTTTCAAACGTAAATCCAGCAAGAAAGGAGCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000014439:ENSDART00000093009:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.722
Domain overlap (PFAM):
C1:
PF0013017=C1_1=PD(28.3=43.6)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGTGACATGCTTTATGCTGC
R:
CTCTGCTCCTTTCTTGCTGGA
Band lengths:
180-448
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]