HsaINT0049213 @ hg19
Intron Retention
Gene
ENSG00000114841 | DNAH1
Description
dynein, axonemal, heavy chain 1 [Source:HGNC Symbol;Acc:2940]
Coordinates
chr3:52378506-52379722:+
Coord C1 exon
chr3:52378506-52378663
Coord A exon
chr3:52378664-52379510
Coord C2 exon
chr3:52379511-52379722
Length
847 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
3' ss Seq
CTTGGCCCCTATCCCTGCAGGGC
3' ss Score
11.14
Exon sequences
Seq C1 exon
GGTTCTAGAGCACCTCAGCAGTCTTGCCAGAGAAGTGAGCCTGGACTATGAGCGCAGCATGAACAAGATCAACTTTGACCACGTTGTCTCTTCCAAGCCCGAGACCTTCTCCTACGTCACCCTCCCCAAGAAGGAGGAGGAGCAGGTGCCTGAGCGAG
Seq A exon
GTGAGGGTCACTGGACCAAGATGGGCTCCATGGCCATCCACCTGGCCAGAGCCCCCTCCCACCTTCCCCTCCAGGATTGTCTGCCCTGCCATTGTGGGCGTCATCAGCCCAACACTCCCTGCACCTCCCCTGTCTCCAGCACTTGTCCCACTTCTCCCTGCTGCCTGGAGGGCTCTGGACCAGGGGAAGGGAAGAAGGCTCTTTTTGAACTTATTAGTGAGAATAGCACAGAAGTTGCAAGGTGAATGTGTACTAGGAAACAATGCTTCAGCAGTAGGTGGAAGGGGCTCTGCTGATCAGACCTAGAGGATAGTCCTTCTTCCTCCAGTAGCAAGAGAGGAGACCGAGTCTCAGAGCAGGACCCCGGGGCCCAAGAACCCTCCTTGCTTTCAGCTCACCTGCCAGCCTTCCTAGACTCAGCTTCCTGCATGTCATGTACTCCGGATGCAGGCTGGGGTGTGGACAGTGGGCATTCCAAGAGGTTCTGGTACCTACCCTTTCCTTCCTTGGTGCCCCAGGGCAGGCTGTGGACAGACCTTAAGCTTGTGTGCAGCACGGGCAGGAGTGGATGAGGAGAGGGTTCTTGGTTCTCATCTACTTCTCAGAGGAGCCTGTGACTAGGGGGTCCTGGAAGGAATTCCTTTACCCATCTCAGAGTAGGCACCTCACTGAAGAGCTTCAGTGCCACTCCGGCAAACTATGGAAAGGCGGGGCTCTGGGAACGCCAGTCACTCTTCAGGGAGAAGGCAGGAGTCATGGCCCTCCTTCAAGCACCCTGTGGATCTGTCCTGTCCCCTGGTTTGGCCAGGCAGGGTCTGATACTGGCCCTTGGCCCCTATCCCTGCAG
Seq C2 exon
GGCTGGTGAGTGTCCCCAAGTACCACTTCTGGGAGCAGAAGGAGGACTTCACTTTCGTGTCCCTGCTCACACGGCCAGAGGTCATCACGGCCCTCAGCAAGGTGAGGGCCGAGTGCAACAAGGTGACCGCCATGTCCCTGTTCCACTCGAGCCTCTCCAAGTACAGCCACCTGGAGGAATTTGAGCAGATCCAGTCACAGACCTTCTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000114841-DNAH1:NM_015512:9
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.005 A=NA C2=0.010
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTGCCAGAGAAGTGAGCCTG
R:
TGGGAGAAGGTCTGTGACTGG
Band lengths:
347-1194
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)