HsaINT0049213 @ hg38
Intron Retention
Gene
ENSG00000114841 | DNAH1
Description
dynein axonemal heavy chain 1 [Source:HGNC Symbol;Acc:HGNC:2940]
Coordinates
chr3:52344490-52345706:+
Coord C1 exon
chr3:52344490-52344647
Coord A exon
chr3:52344648-52345494
Coord C2 exon
chr3:52345495-52345706
Length
847 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
3' ss Seq
CTTGGCCCCTATCCCTGCAGGGC
3' ss Score
11.14
Exon sequences
Seq C1 exon
GGTTCTAGAGCACCTCAGCAGTCTTGCCAGAGAAGTGAGCCTGGACTATGAGCGCAGCATGAACAAGATCAACTTTGACCACGTTGTCTCTTCCAAGCCCGAGACCTTCTCCTACGTCACCCTCCCCAAGAAGGAGGAGGAGCAGGTGCCTGAGCGAG
Seq A exon
GTGAGGGTCACTGGACCAAGATGGGCTCCATGGCCATCCACCTGGCCAGAGCCCCCTCCCACCTTCCCCTCCAGGATTGTCTGCCCTGCCATTGTGGGCGTCATCAGCCCAACACTCCCTGCACCTCCCCTGTCTCCAGCACTTGTCCCACTTCTCCCTGCTGCCTGGAGGGCTCTGGACCAGGGGAAGGGAAGAAGGCTCTTTTTGAACTTATTAGTGAGAATAGCACAGAAGTTGCAAGGTGAATGTGTACTAGGAAACAATGCTTCAGCAGTAGGTGGAAGGGGCTCTGCTGATCAGACCTAGAGGATAGTCCTTCTTCCTCCAGTAGCAAGAGAGGAGACCGAGTCTCAGAGCAGGACCCCGGGGCCCAAGAACCCTCCTTGCTTTCAGCTCACCTGCCAGCCTTCCTAGACTCAGCTTCCTGCATGTCATGTACTCCGGATGCAGGCTGGGGTGTGGACAGTGGGCATTCCAAGAGGTTCTGGTACCTACCCTTTCCTTCCTTGGTGCCCCAGGGCAGGCTGTGGACAGACCTTAAGCTTGTGTGCAGCACGGGCAGGAGTGGATGAGGAGAGGGTTCTTGGTTCTCATCTACTTCTCAGAGGAGCCTGTGACTAGGGGGTCCTGGAAGGAATTCCTTTACCCATCTCAGAGTAGGCACCTCACTGAAGAGCTTCAGTGCCACTCCGGCAAACTATGGAAAGGCGGGGCTCTGGGAACGCCAGTCACTCTTCAGGGAGAAGGCAGGAGTCATGGCCCTCCTTCAAGCACCCTGTGGATCTGTCCTGTCCCCTGGTTTGGCCAGGCAGGGTCTGATACTGGCCCTTGGCCCCTATCCCTGCAG
Seq C2 exon
GGCTGGTGAGTGTCCCCAAGTACCACTTCTGGGAGCAGAAGGAGGACTTCACTTTCGTGTCCCTGCTCACACGGCCAGAGGTCATCACGGCCCTCAGCAAGGTGAGGGCCGAGTGCAACAAGGTGACCGCCATGTCCCTGTTCCACTCGAGCCTCTCCAAGTACAGCCACCTGGAGGAATTTGAGCAGATCCAGTCACAGACCTTCTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000114841:ENST00000486752:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTGCCAGAGAAGTGAGCCTG
R:
TGGGAGAAGGTCTGTGACTGG
Band lengths:
347-1194
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development