DreINT0057995 @ danRer10
Intron Retention
Gene
ENSDARG00000100115 | dnah1
Description
dynein, axonemal, heavy chain 1 [Source:ZFIN;Acc:ZDB-GENE-081015-3]
Coordinates
chr11:34451325-34451798:-
Coord C1 exon
chr11:34451650-34451798
Coord A exon
chr11:34451537-34451649
Coord C2 exon
chr11:34451325-34451536
Length
113 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGAG
5' ss Score
4.86
3' ss Seq
GCTGTCTCCTTTCCTTCTAGGCT
3' ss Score
11.1
Exon sequences
Seq C1 exon
TCTACAGGAATGCGAGAAGCAGCTGGAGAAAGAGCTTAATTTGGAATACAGCCGCACTCTGAACCAGATGTGCTTTAATAAGGTGGTACAGGACAAGCCAGAGGACATCACACTTCCTCAAACCCAACCCGAGAGCATTCCTGAGAGAG
Seq A exon
GTAGAGACTATGATGGACATCAAAAGCAAAGAGACTGCTTTCAGACTGTCAGGGCTTTAACAGTGATTTATTTTATGGGCCCACACACATATTGCTGTCTCCTTTCCTTCTAG
Seq C2 exon
GCTTCGTGTCAGTCCCAAACTATCCTTTTGAGAAGAACCGTGCAGCTTTTGTCTTTAATTCTCTGCTCACTAAGGCTGAGGTGATCGCGGTGCTGTCCAGAGTAAGAGAAGAGTGCAACCGGGTGGCAGAAATGAGCCTGTTTTATGTCAGCTTCACAAAGTCACTTCGTTTAGAGGAGTTTGAGTCCGCACAGTCCCAGAAACATTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000100115:ENSDART00000161471:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.118 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGGACAAGCCAGAGGACAT
R:
CTGTGCGGACTCAAACTCCTC
Band lengths:
256-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]