RnoINT0048561 @ rn6
Intron Retention
Gene
ENSRNOG00000026914 | Dnah1
Description
dynein, axonemal, heavy chain 1 [Source:RGD Symbol;Acc:621795]
Coordinates
chr16:7390960-7392319:-
Coord C1 exon
chr16:7392162-7392319
Coord A exon
chr16:7391172-7392161
Coord C2 exon
chr16:7390960-7391171
Length
990 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
GGCTCTCGCCCCCTCTGCAGGGC
3' ss Score
8.87
Exon sequences
Seq C1 exon
CGTCCTGGAGCACCTTAGCAGCCTGGCCAGAGAAGTGAACCTGGACTATGAACGCAGCATGAACAAGATCAACTTTGACCAGATTGTCTCTTCTAAGCCAGAGACATTCTCCTTTGTGACTCTTCCTGAAAAAGAGGAAGAAAAGGTGCCCAATCAAG
Seq A exon
GTGAGGACCACTGGATCCTGACTGCCTACCTGGCTAGCTCACCCCACCTCTGCCTCTCTTTATAGGATTTTGTTCAGTCACTAGGGCTCTCATAAACCTGGGTAAACCTCTGTGCCCACCTTGTCCCTACTATTTACACTGTTCTTTTGCCAGATGCCAGGAAATCTTGCCTGAGGAACAACTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCCCAGTAATGTTGAAGCCACAAGGTAAGTATGTACCAGAAAAGCCATGGTCAAATGTAGATGTCAGGCACTTGATAGCCAGGCCTCAAAGACACACACACACACACACACACACACACACACACATATATATATATATGCCTTCTTCCTCCTATAACAATAACAGAGCTAGCATTGCTACAGCTCCATGGACATATAGAAGACCAAGTCTCAAGTTGCTTTGAGCCCACCCATAGATGCTGAGTACACTTCCTGATCCCAGATTCATGTGTGCGATGTGCCCAGGGTACAGGTTGGACTGTGAATAACAAGCATTCTTGGACCCAATATTCTTCTTCGGGCTCCCAGAGCGTGCTCCAGATCAGCCTCTGGCTTTTTTTTTTTTTTTTTTTTTTTTTGGTTCTTTTTTTTCGGAGCTGGGGACCGAACCCAGGGCCTTGCACTTCCTAGGTAAGCGCTCTACCACTGAGCTAAATCCCCAGCCCCCAGCCTCTGGCTTTGTGTAGCAAGGGTAGGGGGGTAGGGAGGGATTTACAGGGTCACACACACCCAAAGGGGTCAATGATGACTGGCAAGCCTGGAGGGAAACTCGGGGCATGTGACTCACTATGGATCTTGGGGATACCACCAAAGGCAAGAGCAGGAAAAGGAGAGTTCTGGGAATGAAAGGAAGCTGTTACGTCTCCTCCATCAGACACTGTGTAGATGAGTGCTATGGCTCTGATGTGTGTCCCAGATGGCTCTGATGCTGGCTCTCGCCCCCTCTGCAG
Seq C2 exon
GGCTGGTGAGTGTCCCCGAATACCCCTTCCGGGAGCAAAAGGAGGATTTCACTTTCGTGTCCCTGCTCACTCGGTCAGAGGTCATCACAGCTCTGAGCAAAGTGCGGGCTGAGTGCAACAAGGTGACCTCCATGTCCCTGTTCCATTCCAACCTCTCCAAGTACAGCCGCCTGGAGGAATTTGAGCAGATCCAGTCTCAAACCTTCTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026914:ENSRNOT00000035009:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.056 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGCCAGAGAAGTGAACCTG
R:
TGGGAGAAGGTTTGAGACTGGA
Band lengths:
347-1337
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]