GgaINT0019453 @ galGal3
Intron Retention
Gene
ENSGALG00000004297 | DNAH1
Description
NA
Coordinates
chr12:2871477-2872645:+
Coord C1 exon
chr12:2871477-2871634
Coord A exon
chr12:2871635-2872433
Coord C2 exon
chr12:2872434-2872645
Length
799 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGG
5' ss Score
9.26
3' ss Seq
GTTCTTTTGTTTGTTGCCAGGGC
3' ss Score
7.98
Exon sequences
Seq C1 exon
AGTACTAGGCTGCATGGGCTGTCTGGAGAAAGAAGTGAAATTGGACTATGAGCGCGCTATGAACAGGATGATCTTTGACAGAGCAGTCACTTCCAAACCTCAGATATTTTCTTATGTCACCCTGCCAGACAAGGAGGAGAGGAAAGTACCAGAGAAAG
Seq A exon
GTATGGGAAACAGTGGGGCAGTTCAGATGTGGCATGCTTGTAAGATCTCTATGATAGGATTTGTGCTTTGTTGCAGAAACTCTCAGGTTCATACTGATGATTAGTGCTCATAAGAGACAGCAGGAGGAAATGTTACCAGACTTTTGAGTATGCCAGCTCTTTTTTAGGGTGTACTTGCACGTTCACGTTACCATCCTATAACACGTTATTATCCATCATCTAAGCTGCAGTAACTGCACCCTTAATGGCACTAAACGCGTGGTGGTATAATTATCTGTCTTTCACTCTGCAGTAAGCTAGGACTGACTTCCTTCTGTTTGCTGTGCTCTGCTGTGGCATAGCTCAGGCGTGGAAGAACTCAGGCTCATTTAGGCTCTCATACTTGCGTGATATGACTACAGTGAGGGGGTATCTTGTGCACTAAAATCCTCCAAAAATTGGAACACCTTGACGTGGCTCACAAGTAGCCTCTCACAGATGACACAGCTGTGTCTTAAAGCTTCAGTGAGAAGATTCTGCCAGTCCTGTGTTCTTAATCGAGGAAATGTCATGAGCCAAAGCCTTGGGAACTTCAGGGACCAGGAGTTCCTCTCAGCCCCTTATGGAAGTGTTCAGAAAGTCACTGCTGCAGGACAGCCGCTCTTTCATCCAGCCATCTACTGAAACTGCATACATGATAAGTTTTCCTGGGGAGAGTCCTTCTCACAAACTGCACCCTAAAACAGAGCTGTACTCTTCCCCCATAGCAGAAACTGAGATGCCCTTGCAGGCAGTAATGTGTTCTTTTGTTTGTTGCCAG
Seq C2 exon
GGCTCATCTGCATCCCAGACTATCCTTTTGACAAACAACGAGCAGCCTTCAATTTTGTCTCGCTCCTGACCAAGCCAGAAGTCGTCCTTGTCCTTACACAAGTGCAAGATGAGTGCAACAAGGCAGCCTCAATGTCTCTGTTTAACTCAAGCTTAGCCAAGCATGTCAGCTTGGAGGAGTTTGAAGAGATTCAGACCCAGACCTTCACTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004297:ENSGALT00000006843:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATGGGCTGTCTGGAGAAAG
R:
TGAGTGAAGGTCTGGGTCTGA
Band lengths:
358-1157
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]