HsaINT0049258 @ hg19
Intron Retention
Gene
ENSG00000197653 | DNAH10
Description
dynein, axonemal, heavy chain 10 [Source:HGNC Symbol;Acc:2941]
Coordinates
chr12:124258696-124265846:+
Coord C1 exon
chr12:124258696-124258811
Coord A exon
chr12:124258812-124265626
Coord C2 exon
chr12:124265627-124265846
Length
6815 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAC
5' ss Score
7.82
3' ss Seq
TCATAAAATTGGCATTTCAGGTT
3' ss Score
6.19
Exon sequences
Seq C1 exon
AGGCAATCTCTGAAGCTACCGACATGAAGGAAGCTATGGAAATTATGCCAGAAACACTGGAGTATGGAATTATAAACGCTAATGTGCTCCATTTTCTGAAGAATATTATATGTCAG
Seq A exon
GTAAACATGGAGAAAGGAAGAAATTCTAGTATTTCTAAAGTTGAGGTCATGTGGTTTGTTTATTCCACAAATAGGTAGCGGGCAGCTCTTCTGTCTCAGGTGCTGTTATGGGCACTGAGGTGCTGAGACCAGCTCGGTTGGGGAGACCCTAACCCAGCGGCGCTAGAGAAATTAAAGACACACACACAGAAATATAAAGGTGTGAAGTGGGAAATCAGGTGTCTCACAGCCTTCAGAGCTGAGAGCCGCAAACAGAGATTTACCCACATATTTATTAACAGCAAACCAGTCATTAGCATTGTTTCTATAGATATTAAATTAACTAAAAGTATCCCTTATGGGAAACGAAGGGATGGGCCGAATTAAAGAAATAGGTGGGCTAGTTAACTGCAGCAGGAGCATGTCCTTAAGGCATAAATCGCTCATGCTATTGCCTGTGGCTTAAGAATGGCTTTCAGCGGTTTTCCACCCTGGGCGGGCCAGGTGTTCCTTGCCCTCATTCCCGTAAACCCACAACCTTCCAGCTTGGGCGTTGGGGCCATTATGGACATGTTACCATGCTGCAGAGATTTTATTTATGGCCAGTTTTGGGGCCAGTTTGTGGCCAGATTTTGGGGTCTTGCTCCCAACACTGAGGGTCAAGCAGTGGACAGGACAGGCAATGGCCCTGCTCTCCAGGAGCTTATGTAGGGGAAAGACATGGCACACAAGCACATCTATGAGAAAATACCGACAAGTGGCATGAGGAAAATAAACCCTGATATGAGACAGAAATAGGCATGTGCACTGTGTGTGTGCAGAGGGCATGGTGAGGAATGGCCTTGCTGAGGATGTGATGTCTAAGCTTTCTTTTTTATTTTTATTGTTTTTCGAGACAGGGTCTCTCCGCCATCCAGTCTGGAGTGCAGTGGCCCAATCACGGCTCACTGCAGCCTCAACTCTCAAGTGATCCTTCTGCCTCAGCCTCCTGAGTGGCTGGGATTACAGGCATACACCACCATGCCTGGCTCATTTTTGTACTTATTGTAGAGACAGGGTCTCACCATGTTGCCTAGGCTGGTCTCCAACTCCTGGGCTCAAACAATCTGCCCGCCTTGGCCTCCCAAAGTGCTGTGATTACAGGCATGAGCCACCATGCTTGGCCTGAGCTTTATAGACCAAAAAAATGAAAAACTCATCAGCAGGCCTTTTTCATGAATGATAAGTTATTAGGGAAATGCACTAGGGAAGGAAGGAAGAGGTGATATTGAACTGAGACCCAAATGAGGCCAAGGCATCAGACATGATAGGATGTGGAGGAAGAGCATGCTGGGCAGAGAGAACAGCAGGTGCAAAGGCCCTGAGGTAGAAGCAGCCTCAGCTTGGCCCAGTAGCAGGAGGATGGCCACTGTGGCTGGAGGGAGGGCTGGAAATGAAGGCAGGTTTAAGCAGGGGAACAACAGGATCTGGTTTGCATTTTACCTCTGGCTATTGTGGGAAAACATATTGCTGGGGTGGAGGGGAAGGAAAGACCAAATAGAAAGCCATGGAAGAGCCCAGGTGGAGGGCTGTATTAGTCCATTTTCATGCTGCTGTAGGGAACTGCCCATAATTTATAAAGGAAAGAGGCTAAATTGAGTCACAGTTCTGCATGGCTGTGGAGGCCTCAGGAAACTTAAAATCATGGTGGAAGGGGAAGCAAACACATCCTTCTTCATATGACGGCAGGAAGGAGAAGTGCTGAGCAAAGAGGGAAAAGCCGCTTATAAAACCATCAGATCTCATGAGAACTCACTCACTATCATGAGAACAGTGGCATGGGGGTAACCTCCCCCATCATTCAATTACCTCCCACCAGGTCTCTCCCATGACACGTGGGGATTATGGGAACTACAATTAAAGATGAGATTTGGGTGGGGACACGGCCAAACCACATCAAGGGTGATGGTTATTTAGGCTCCAATCAGGGGAGGGAGGGAGAAGCAGACAGTGTGAGGAATGCCTTGAGGATCAGGCCATGGGACTTGCTAATGACCGGGATCTGGAGGCTTTGAAGAGTATCACAAGAATAGAGAGTACCAAGAATGACTCTTGGTCCCAGCACTTTAGGAGGGTGAGGCGGGAGGATCGCTTGAGGCTAGGAGTTTGAGAACAGCCTGGGCGATATAGCAAGGCCCCATCTCTAAAAAAAAATTTAAAAAAGAATGACTCTTAGGATTTGGGCCTGAGAAACTGGGAGGATGGTGAAGTCATTACTGAGATGGAGGATGGGGAGAAACAGATATGGAGGGAAACTCAAGTGTTGTATTTTGCATTCTAGACGGGAAGGTTGCAGAGTATGGTGGTCATGCCACTGCACTACAGCCTGGGTGACAGAGAGATATTCCATCTCTAAAAAAAAAAAAAAGAAAAATAAATTAAGATAACATCAAAACATGATGTATAATGTTAAGCACAGGTGGCCTCTTAGACATTCAAATCAAGACGTGAAGCAGGATGTATGAATCTGGAGCTCTGCGGGGAACTCAGGGCATCCGTCTAGCAAATATTCATTGAGCACCTACTGTATTTCATAGCAATGAACAACTGAGACAAGGTCTCTGCCTCGTGGAGCTTTCATTCTAGACAGGAAGATGTACATTAACCAAGATCAATGAGAAAATATATAGTGTGTTAGACAGCAACAAGAGTTAGGGAGAAAAATGAAGCCAGATAGGAAAGAAAAAGGAAACAAGGGGGAGAGGGAAAGTTGATAGGTGGAAAGGTGGGGCTTTTGCAATTTTAGATAGGGTGGCCAGGAAGACTTCACTGAGAAGATTTGGACAAAAAAGTCCAAACCAACACAATATCCTCTTTTGCTTGGACTATCGCAGGAGCCTCCAAAAAGATCCCTCAGTTTCTGTTCTTACCCTCTACGCTGCCTTCTCCACATGCCAACCAGAGTGATGCTTTAAAACATGGGCATCATCAGCACAGAGATGGTGTAAAACCAAGGGACTGGGTGGAACAACCAAGGGAGGGAGTAGAGATGGAAGAGATGAGGGGAGAGGAAAGTTAGGACGTGGGTGATCCAGAAGCCAAGAGAAGACAATGCTTCACTGAAGAAGGGAGGGGCCCGCCGTGCCACTTGCTGCTGGAAGTCAAGAAGGCACAGGCAAAGAAGAGCTGGAGGGCTTGGCCCTGGGTGACTTCCATGTGAGCAGTTCTGGGGATGGGAGCAGACGAGGTCTCACGGAGTACAAGTCATCCTGTGAGTTAGGCTGTGGGGCCCTCCCCACTGAGCTGCCTGCACACAAGGGACTTTCTACCTGAAGACAACCTCCTTCATCGGGATGATGTCTTTTTCTAGTGTGACTTTGGAGGACTCAAGAACATTGGCTACCTTCTTATTTATTTATTTATTTTTATTTACTTATTTTTGAGACAGCGTCTCATTCTGCCACCTAGGCTGGAGTGCAGTGGCGCGAGCATGGCTCACTGCAGCCTTAACCTCCCAGGCTTAAACGATCCTCCCACCTCAGCCTCCTGAGTAGCTGGGAGGATTACTAAAAATTAGCCAGGTGCACGCCACAATGCCTGGATGATTTTTGTATTTTTTTTTTAAAGACGGTGTCTCAGTATGTTGCCAAGGCTGGTCTCAAACTCCTGGGCTCAAGTGATCTGCCCTCCTCGGCCTCCCAAAATGTTGGGATTGCAGGCATGAGCCACCATATCTGGCCACACTGGCTACCTTCTTATGCAAACTGAACTTTTCATTCTAAAATAACAAAATAACATCAACCCCATCTCTACCAAAAAGAAAAAGAAAAATCTGCTGGGCATGGCTGTGGGTGTCTGTAGTCCCAGCTACTCTGGAGGCTGAAGTGGGAGGATCGCTTGAACCCAGGAGTTTAAGGTTGCAGTGCATGGTGGTCATGCCACTGTACTACAGCCTGGGTGACAGAGAGATACTCCATCTCTAAAAAAAAAAAATGAAAAATAAATAAGATGACATCAAAACATGATGTATAATTAATTCTTAGTGGTTATATGCATTATGACAACCAGTCATGTCTAAAGGACACAGGGCTCAACTTGAAGAGGCTCATGCCAGCCACAGATGGGATATTTTGACCTTCAGTAAGGATAAAATTGCAGTGGGTTGAAGCATAGAAAATATATTCAAATACAGCCAGGCGCAGTGACTCGTGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGTGGATGGATCACCTGAGGTCAGGAGTTCGAGACCAGCCTGATCAATATGGCGAAACCTCCATCTCTACTAAAATTACAAAAATTAGCTGGGCATGGTGGCATGCACCTGTAGTCCCAGCTACTTGGGAGGCTGAGGGAGGAGAATTGCTTGAACCCAGGAGGTGGAGGTTGCAGTGAGCTGAGGTCATGTCACTGCACTCCAGCCTGGGTGACAGAAAGAGACTCCATCTCAAAAAAAAAAGAAAAAAAATATATATGTTCAAATGCATGAGTTAAAAACATTTTTTTAAGAGACACAGTTCTTACTCTATTGCTCAGGCTATAGTGCAGTGGCACAATCACATCTCACTGCAGCCTCAAACTCCCAGGTTCAAGTGATCCTCCCATCTCAGCCTCCGGAGTAGCTGGGTCTATAGGTGCACACCACTAAGACTGTCTCATTTTTTTTTTTTTGAGGCGGAGTCTCACTGTGTCGCCCAGTCTGGAGTGTAGTAGTGCGATCTCAGCTCACTGCAACCTCTGCCTCCCGGGTTCATGCCATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTAGAGAGAGGCACCCGCCACCACACCTGGCTAATTTTTTGTATTTTTAGTAGAGATGGGTTTTCACCATGTTAGCCAGGATGGTCTCGATCTCCTGACCTCGCGATTCACCCGCCTCGGCTTCCCAAAGTGCTGGGATTACAGGTGTGAGCCACCGTGCCCGGCCTAATTTTTTTCTTTTAATTGTAGAGATGGGGTCTCCCTATGTTGCCCCGGCTGTTCTCGAACTCCTGGGCTCAAGAGATTTTCCCGCCTTGGCCTCTCAAAGTGCTGGATTACAGGCATAAGCTACCATGCCCAGCTTTTCAAATCCATGAATTTATAATGATCTTTAAAAGTCCTGATGGGTCATTTCTGGAGGATGATAGGGGACCACTGTACTATTTCAAAAATTGGGCAAATAAAGAGGAGTCAAGCATTTATGTTGCCTTCCCCATATGAAATGTACGGGATCATCTAGCAGTAGCTGTGAGAGGCGTCTTTATATCAGCATCTCAGCTAATAAACAGACATTTTAGAACATTTCAATTTTGGAACCCCCACTTGATTAATGGACCTGGGGGTGGGGGAGAGAGAGAGAGAGAGAAACAAAACCAAAACCAAGAATTTGATTCCTGATGGAAGATACACCCTGGTCAAGTCTCTGGTCCCAGCTGCCAATTTGCAGGAAATACACATCACAGAGGAACTTCAACTGCACAGTGAGTGTGTAGTCAGCAAAATTTGGATTGGGCAGCTCTACAAATCCAACATTCTGGGTTCTTCAGTATGTTGCAGGAAATACATATAGATTCAAAGAGTCATAAAAAGATGTATCAAAATTTTAAGAAATATAGACAAAACTAAAAAACAAAAACAAAACTCAGCCAACCAACCAACCAACTTAATCAACCCACAGGCATTTATAGATCACTTTTTATGTGGGCTGGGGGCTAAGTTGTTTCGTAATTGTATTCAGGTGACTTCATAAATGCATGCTTCTCTCTCTAGCTACATTTTGAAGAAACTATGTCCTCAAGAACTTAATTTTCAAGAACAAGATGGTCCTGAGCTGATGGTTTAACACAGTTTCTTACCTCCCTGTGCCAGTTTCCCCTCCCTCCCTCCCTCCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTTTCTGAGACAGGGTCTTGCTCTATCGCCCAGGTTGGAGTGCAGTGGTGCGATCTCGGCTCCCTGCAACCGCCGCCTCCTGGTTCAAGCAATTCTCATGCCTCAGCCTCCCGAGTAGCTTGGACCACAGGTGTGCACCACCACACCCAGCTGATTTTTGTATTTTTAGTAGAGATGGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCAAGTGATCCACCAGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACCGCAGCCAGCTCCCTGTGCCACAGTTTGTAACTTCTCAGTTACTGGTGGTATACAGAAATAACAGCACTGTTTTTGGGGCAGTTGTGTCAGGCCTGGTTAAAATTGATGCCCTTGGATCACTTTAAGTCAAATGTAATCTCTCTGTCTTTAGGTCTGTGCTCCGGTTTGAGTGGTTTTCACTTTGCATATTTGTATCTCAATATAAAAGAATATTCAGGCTGGGTGCAGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGGGGGTGGATCATGAGGTCAGGAGATCGAGACTAGCCTGGCCAACATGGTGAATCCCCATCTCTACTAAAAATACAAAAATTAGCTGGGTGTGCTGGTGTGTGCCTGTAATCCCAGCCACTTGGGAGGCTGAGGCAGGAGAATCGCTTGCACTGGTGAGGTGGAGGTTGCAGTGAGCCAAGTGCACAGCACTCCAGCCTGGTGACAGAGTGAGACTCTGTCTCAAAAAAAAAAAAAAAAAAAAGAATATTCAAAACCAGAGGCAATTTGAATAAAGAATATTCAAAACCAGAGGCAATTTGAATACATGAATTATTGAAAATGACTTCATATGATGTATTTCATAAAATTGGCATTTCAG
Seq C2 exon
GTTTTTTTGCCAGCATTGTCCTTCAATCAGCACAGGACGAGTACAACCGTGGGAGTCACATCTGGAGAAGTCTCTAATTCCTCTGAGCATGAATCAGACCTGCCGCCCATGCCTGGGGAGGCAGTAGAATATCACAGTATTCAATTAATACGGGATGAATTTTTAATGAACGTGCAGAAATTTGCAAGTAATATTCAAAGAACCATGCAGCAACTTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197653-DNAH10:NM_207437:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.154 A=NA C2=0.247
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)