MmuINT0050613 @ mm9
Intron Retention
Gene
ENSMUSG00000038011 | Dnahc10
Description
dynein, axonemal, heavy chain 10 [Source:MGI Symbol;Acc:MGI:1860299]
Coordinates
chr5:125211761-125212886:+
Coord C1 exon
chr5:125211761-125211876
Coord A exon
chr5:125211877-125212663
Coord C2 exon
chr5:125212664-125212886
Length
787 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACC
5' ss Score
8.66
3' ss Seq
AACACATTGTGCCTTTGCAGGTT
3' ss Score
9.86
Exon sequences
Seq C1 exon
ACGCCATCCCAGAAGCCACAGACATGAAGGAAGCAATGGAAATCATGCCAGAGACCATGGAGTATGGGGTCATCAACTCTCAGGTGCTCCAGCTCCTAAAGGACGTCATCTGCCAG
Seq A exon
GTAACCGCGGAGCCCACAGAGACCCTGGCATCTCCCAGACAGTGGCTGCTTCCAAAGAAGGGCTGGAGAGTCCACTAGCTCTGTCTGTGTGCCTATTCATTTAAGATAGGTTGATTTTGAGACAGGGTCTTCATAGCCCTGGCTGGCCTGGAATTCCCTTTGTAGACCAGTCTGGCTTTGAACTCATGGGTAGTGGTACAGCACCTGCCTGTCAAGTGCTGGGATCACAGGTCGGCTCCTGCCACACCAGGCCTCTGGGTGACATCTTTTAGTCTCTCAACATCTGAGAGCAGAGCCGCTGCTTGCTTAAGCCAATCAAGCCATTTGTTATAAAATATCCTCAGAGTGAAACACAATTCTTTCTAAGCGGTCACATGTCACATAAGTAGATCCAGACATCACCTGCAACCTCTGTTGTATCAAAAATCCTTCTTGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCTCTTCCGAAGGTCTAGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCCGTAAGGAGATCTGACTCCCTCTTCTGGTGTATCTGAAGACAGCTACAGTGTACTTACATATAATAATAAATAAATCTAAAAAAAAAAATCCTTCTTGTCTCAATAGCCAGCCCAGGCTGCCTCAAACTGCAGTCCTCCTGCCTCAGCCTCCTGAAGGCTGGAGCTATAGGCCTGGCACCGACTTGCACATCCATCAGTGTAACAGACAGCTGGAGACCCTGAGCAGGTTAGCTGTAACACATTGTGCCTTTGCAG
Seq C2 exon
GTTTTCATGCCCGCACTGTCCTTCAACCAGCACAAATCGGAGTCAGGCCAGGGGACACTGTCTGGAGAGAACCAGGAGTTTTCTGTTTATGACCTGGCAGAGTCGGTGGTCATCCCGGGGGAGCCGATGGAGTACCACAGCGTCCAACTGATCCGCGATGAGTTCTTAATGAATCTGCAGAAATTTGAGAACAACATTCAAAGGACTATACAGCAGCTTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038011-Dnahc10:NM_019536:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.231 A=NA C2=0.113
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATCCCAGAAGCCACAGACA
R:
TCAAGCTGCTGTATAGTCCTTTGA
Band lengths:
334-1121
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: