BtaINT0050199 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016523 | DNAH10
Description
dynein, axonemal, heavy chain 10 [Source:HGNC Symbol;Acc:HGNC:2941]
Coordinates
chr17:54176736-54182741:-
Coord C1 exon
chr17:54182626-54182741
Coord A exon
chr17:54176953-54182625
Coord C2 exon
chr17:54176736-54176952
Length
5673 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
3' ss Seq
TCTTAAACTTGGCTTTTCAGGTT
3' ss Score
9.25
Exon sequences
Seq C1 exon
AGACCATCTCTGAGGCGACTGACATGAAGGAAGCTATGGAAATTATGCCCGAAACGCTGGAGTATGGGATTATAAATTCGCATGTGCTTGCTTTCCTGAGGGATGTTATATCTCAG
Seq A exon
GTAAATATGGATGGAAAAAAGAATCTTGGCACTTTTTACAAGTAAGGCCATCTGGGAATTCCCTGGTGGTCCAGTGGTTAGGACTTGGCACTTTGACTGCCAAGGGTGCGAGTTCAGTCCCCAGTCAGGGAACTAAGATCTCACAAGCCAAGCAGCTCAGCCAAAAAAAATAATGAAAAAAGAGTAAGGCCATTTGCTTCATTGATTCCATAAAGAGGTGGTTGGCAACTCTTAGGTTCCAGACACTGTCATGGGGTTTGTTGGTGGAGTTGTGAGCAGTGGTGCGTGTTGTGAGCAGGACAGATGACATCCTTGTGTTCTGGCTTATACTGGTGGAAAGACACCAGTCATCAACACAAAAACAGGAAACTCTCGGGTAATGATGGCTGACTTGAGGAAGCGAAACCCTAGCAATGTGCTAGAGAGGGCTTCCTTGGTGACTCAGGGGTAGACTCTGCCTGCCAATGCAGGAGATGTGGGTTTGATCCCTGGATCAGGAAGACCTCCTGGAGGAGGTCATGGCAACTCACTCCAGTATTCTTGCCTGGAGAATTCCTCGGACAGAGGAGGCTGGTGGGCTACAGCCCATGAGGTTAGAGAGTCAGACACGACTTAGAGACGAAACACCAACAGCAATGTAATAGAAATGGCCTGTGTGAATACGTGTGTGTTCACGTGGTGGCGGCTAGGGACACCTAGCTGGAGAGGTGACATCTGACTTTTAGACAACCAATTAAAAAAGCCCATAAGCAGGCTTATTCACTAATGATAAGTTATTAGGAAAATGTAATAGAGTGGGAGTGAGGTGGTCAGGAAAAACCCCCTCTGAGGCAGAATTGAGAGGTGGATGAGGTGAAGGCATCAAACAAGTGAGGATCTGGAGGAGGAGGATCCTGGGCAGAGAAAACAGCATGTGCAAAAGTCCTGAGGCAGGAGCAAACTCTGTTTAGTCTACAAACAGAAGGATGAGCAGTGCAGCTGGAGCATAGTGAGTGAAGTTTGGAAAGGAAAGTAGGTTTGAAGCATATGCATAAAATGATCTGGTTTGCATTTTTCTTCTCATCATTGTGTGTACAACATATTGCAGAGGCGAGAGCGTAAGGGGCCAGTAGACCTAATAGCAGGCTATGGAAGTGTCTGAATGGTGGGTGATAGTTGTTTAGGCTCCAGAGTTCAATCAGGGGAGGCAGTGGGAAGCAGACAGCATCAAGAATACGTTAGGGACGGAGCCAACAGGCCTTCTGATGATTTGGATATGGAGCTTTAGGAAAAGAGCATCAAGAATGACTCCTAGGATTTGAGTTTGAACAACCGGGGGATATTAGGGTCATTACTGAGATGGGGGGAGTGGAAGGATCTGGAGGAAAAAAACCCCAGACTCTATTTTGTACATATTAAGCTTGAGATGCCTTCTAGACATCCAAGATGAGGTGTGAGGCAGGATGAATGTCAAAGATCAAGGGAGAACTCAAGGGATTCCAAACATATATATTTTTATTCTATCTTTTTTTTTTTTTTGGCTGCGCCAAAGCACCTTAGTTCCCTGAGCAGGGACTGAATCCATGCCCTCTGCTTTGGGAGTGTGGAGTCTCCACCACTGGACCATCAGGGAAGTCCCTCCAGCAAGTTTTTATTGAGCACCTACTGTATCCCCATAGCAGTGATCACCATAGTCAAGGTCTGTATCTCACGGACCTTACATCCTAGTCAGGAAGAGTCACATTAAGTGAGATCAATGAGAAAATATACACTATGTTAGACCATGATAGGAGTTAAGGAGAAAGACGAAGCTGGGAAGGGGGTTAGGAAATGTTGGCAGGTGGTAAAGACAGGACTTTTGAAATACTGAATAGGGTAACCAGAAGGCTTCAGTGTTGTCTTTTGTTGGGACTCTTGCAGTTGCCTCCTGATAGATTTCCCAGCTTCTGCTCATGACCCTCTACTATATTCTTCACATGTCAACCAGAGAGATTCTTTAAAATATGGGAGTCACCGACATGGTGTCACTGTTATTTGTAGTATCTCAGTTCAGTTCAGTCGCTCAGTCGTGTCTGACTCTTTGCGACCCCATGGACTGCGGCACGCCGGGCTTCCCTGTCCATCACCAACTCCTGGAGCTTACTCAAACTTATGTCCATTGAGTCAGTGATGCCATCCAACCATCTCATTCTCTGTTGTCCCCTTCTCCTCTGGCCTTCAATCTTTCCCAGCATCAGGGTCTTTTCCAATGAGTCAGTTCTTTGCATCAGGTGGCCAAAGTATTGGAGTTTCAGCTTCAGCATCAGTCCTTCCAATCAATGTTCAGGACTGATCTCCTTTAGGATGGACTGGTTTGATCTCCTTGCAGTCCAAGGGACTCTCAAAAGTATTCTTCAATACCACAGTTAAAAAGCATCAATTCTTTGGCACTCAGCTTTCTTTATGGTCCAACTCTCACATCCATACATGACTACTGGGAAAACCATAGCTTCAACTAGATGGACCTTTGTTGGCAAAATAATGTCTCTGCTTTTTAATATTCTGTCTAAGTTGGTCATATCTTTTCTTCCAAGGAGCAAGCATCTTTTCTTGCTTCCTGATTTTGGAGCCCGAAAAAATACTCACTGTTTCCATTGTTTCCCCATCTATTTGCCATGAAGTGATGGGACCAGATGCCATGATCTTAGTTTTTTGAATGTTGAGTTTTAAGCCAGCTTTTTCACTCTCCTCTTTCCCTTTCATCAAGAGGCTCTTTAGTTCTTCTTCACTTTGTGCCATAAGGGTGGTGTCATCTGCGCATCGGAGGTTACTGATATTTCTCCCGGCAATCTTGACTCCAGCTTGCACTTCATCCAGCCCAGCGTTTCTCATGATGTACTCTGCATAGAAGTTAAATAAGTGGGGTGACAATAATACAGCCTTGACGTACTCCTTTCCCAATTTGGAACCAGTCTATTGTTCCACGTCCAGTTCTAACTGTTGCTTCTTAACCTGCATACAGATTTCTCAGGAGGCAGGTCAGGTGGTCTGGTATGCTCATGTCTTGAAAAATTTTCCACAGTTTGTTGTGATCCACACAGTCAAAGGCTTTGGGGTTGACAATAAAGCAGAAGCAGATGTTTTTCTGGAACTCTCTTGCTTTTCTATGATCCAATGAATGTTGGCAATTTGATCTCTGGTTCCTCTGCCTTTTCTAAATCCAGCTTGAACATATGCAAGTTCTCGTACTGTTGAAGCCTGGCTTGGAGAATTTTGAGCATTACTTTGCTAGTGTGCGAGATGAGTGCCAGTTGTGTGGTAGTTTGAGCATTCTTTGGCATTGCCCTTCTTTGGGATTGGAATGAAAACTGACCTTTTCCAGTCCTGTGGCCCCTGCTGAGTTTTCCAAATTTGCTGACATGTAGAGTGCAGCACTTTCACAGCATCATCTTTTAGGATTTGAAATAGCTCAACTGGAATTTCATCACTTCCACTAGCTTTGTTTGTAGTGATGCTTCCTAAGGCCCACTTGACTTCACATTCCAAGATGTCTGGCTCTAGGTGAGTTATCACACCATCGTGGTTATCTGGGTCATGAACATCTTTTTTGTATAATTCTTCTGTGTATTCTTGCCACCTCTTCTGAATATCTTCTGCTTCTGTTAGGTCCATACCATTTCTGTCCTTTATCGAGCCCATCTTTGCATGAAATGTTCCCTTGGTATCTCTAATTTTCTTGAAGAGATCTCTAGTCTTTCCCATTCTATTGTTCTCCTCTATTTCTTTGCACTGATCACTGAGGAAGGCTTTCTTATCTCCCCTTGCTATTCTTTGGAACTCTGCATTCAGATGGGTATATCTTTCCTTTTCTCCTTTGCTTTTCACTTCTCTTCTTTTCACAGCTATTTGTAAGGCCTCCTCAGACAACCATTTTGCCTTTTTGCATTTCTTTTTCTTGGGGATGGTCTTGATTCCTGTCTCCTGTACAATATCACGAACCTCTGTCCATAGTTCATCAGGCACTCTGTCTATCAGATCTAATCCCTTGAATCTATCTCTCACTTTCACTGTATAATCGTAAGGGATTTGATTTAGGTCATACCTGAATGGTTTCCCATACTTTCTTCAATTTAAGTTTGAATTTGGCAATAAGGAGTTCATGATCTGAGCCACAGTCAGCTCCTGGTCTTGTTTTTGCTGACTGTATAGAGCTTCTCCATCTTTGGCTGCAAATAATATAATCAAGCTGATTTTGGTATTAACCATCTGGTGATGTCCATGTGTAGAGTCTTCTCTTGTGTTGTTGGAAGAGGGTGTTTGCTATGAGCAGTGCGTTCTGGTGGCGAAATTCTATTAGCCTTTGCTCTGCTTCATTCTGTACCAAAGCCAAATTTGCCTGTTACTTCAGGTATCTCTTGACTTCCTACTTTTGCATTCCAGTCCCCTATGATGAAGAGGACATCTTTTTTGGGTGTTAGTTCTAGAAGGTCTTGTAGGTCTTCATAGAACCATTCAACTTCATCTTCTTCAGCATTACTGGTTGGGGCATAGACTTGGATCACTGTGATATTGAATAGTTTGCCTTGAAAACGAACAGAGATCATTCTGTCATTTTTGAGATTGCACCCAAGTACTGCATTTCAGACCCTTTTGTTGATTATAAGGGCTACTCCATTTCTTGTAAGGGATTCTTGCCTGCAGTAGTATAAATAATGGTCATCTGAATTAAATTCGCCCATTCCAGTCCATTTTAGTTCACTGATTCCTAAAATGTCTATGTTCACTCTTGCCATCTCCTATTTGATCACTTCTAATTTATCTTGATTCATGGACCTAACATTCCAGCTTTCTATGCAATATTGCTCCTTATAGCATTGAACTTTACTTCTATCACTGGTCACATCCACAACTGGGCATTGTTTTCGATTTGGCTCTTTCTCTTCATTCTTTCTGGAGTTATTTCTCCACTCCTGTCCAGTAGCGTATTGGGCACCTACCGACCTGGGGAGTTCATCTTTCAGTGTCATATCTTTTTGCCTTTTCATACTGTTCATGGGCTTCTCAAGGCAAGAATACTGAAGTGGCTTGCCATTCTTTTTTCCAGTGGACCATGTTTTGTCTCTATTAGGGTACAAACACATTCAAAGCCAGAGGCAACTTAAATGCATGAATTATTGAGTATGATGTTGTGTGATTTGTTTCTTTTTAAAACATTTTTTTATTGGGTTACAGTTGATTTAAAACATTACATTTGTTTCTGCTGTACAGCAAAGTGACTCAGTTACATGTATACATATATCCACTCTGATTTTGTATTCTTTCCCCATATAACTCACTACAGAGCTCTGGGTAGATTTCCCTGTGCTGTATAGTAGGTCCTCATTAGTTATCTATTTTATATATAGTAGTGTATGTATGTCGATCCCAGTCTCCCATTTTTTAAATTTATCCCTCCCCTGCTCCCTGCATTCCTCCCTGGTAACCATAAGTTTGTTTTCTACATCTGTGACTTTTCTTCTGTTTTCAAGGTGATTTGTACTCAGCCATAAATAAGAACAAAATAGTGCCATTGGCAGCAACTTGAAATGGACCTAGAAATTGTCATACTGAGTGAAGGAAATCAGACAGAGAAAGGCAGCTATCATATGATACCGCATATATGTGGAACCTAAAAGAGCGGCACAAATGATTTGATTCTTAAACTTGGCTTTTCAG
Seq C2 exon
GTTTTTTTGCCAGCCTTGTCCTTCAGTCAGCACAAGGATGCCAACCTGGGACTCACGTCTGGAGAAGTCTTAGACTCTTTTGATTATGACATAGACCTACCTAGCATGCCTGGGGAAGCAATAGAATATCACAGCATTCAGTTAATACGAGATGAATTTTTAATGAACATCCAGAAATTTGCAAGTAGTATTCAAAGAACAATGCAGCAACTTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016523:ENSBTAT00000029664:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.128 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development