GgaINT1011474 @ galGal4
Intron Retention
Gene
ENSGALG00000003170 | DNAH10
Description
dynein, axonemal, heavy chain 10 [Source:HGNC Symbol;Acc:HGNC:2941]
Coordinates
chr15:4903505-4903881:-
Coord C1 exon
chr15:4903766-4903881
Coord A exon
chr15:4903641-4903765
Coord C2 exon
chr15:4903505-4903640
Length
125 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
3' ss Seq
CTGTTGTCTCCTCTGATCAGCAA
3' ss Score
7.01
Exon sequences
Seq C1 exon
AAGCAGTTACTGAACCTGATGACCTGATTGAAGCTGATGTGGTTCTTCCTAAAGTGATAGAGTTTGGATTACTGACTGATAGTACTCTTTTGATGCTAAATAATATCTTCTCAAAG
Seq A exon
GTAAATGTGTTACAGCTTTTATATACGGAGTTCTCAGTGTTTCTCTGAGTAATTTGCTTACTTAGTATTCTGCTGACTACTTGTCTGAATTATAGGAATTTTTGTCTGTTGTCTCCTCTGATCAG
Seq C2 exon
CAACAGGCTGTGGAAGTTTCCTTTGCAGAAAAGGAAGTGCAACCTGTGGGGTACCATAATACTCAGATAAGGAATGATGGTGTGAACATGCAGAAATTCTTAGGCACTTCTCATCTGACTCCACAGCAAACTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003170:ENSGALT00000005023:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.143
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGTTACTGAACCTGATGACCT
R:
TCAGTTTGCTGTGGAGTCAGA
Band lengths:
248-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]