HsaINT0049371 @ hg38
Intron Retention
Gene
ENSG00000174844 | DNAH12
Description
dynein axonemal heavy chain 12 [Source:HGNC Symbol;Acc:HGNC:2943]
Coordinates
chr3:57542701-57544341:-
Coord C1 exon
chr3:57544197-57544341
Coord A exon
chr3:57542904-57544196
Coord C2 exon
chr3:57542701-57542903
Length
1293 bp
Sequences
Splice sites
5' ss Seq
CAGGTACTT
5' ss Score
8.17
3' ss Seq
TATGGACTTTTTCTCCTCAGAGT
3' ss Score
9.12
Exon sequences
Seq C1 exon
CTTCTCCAGCTACTCGTTTGAGAGCCGGTGGCGTTCCGGAGGTTTCTCCCTCGTTATCCCCCTGCCTTTCACCTGAGGAGAGGCTCTGACTGTCTCTCTCTCTCTCTGGCGTCTGCGCAGCGGGGAAGTAGTGAGAAACAATCAG
Seq A exon
GTACTTGTTCTCTGCTGTTCTCTTCCTTTCTCTCCCAGGGCAGGTATCGCGATTTGGGTGCCAACTTAAACACTCTTTCAAGGCAGGAATCTCCAAATCCTGTAGGCATTCATGGCAAATATAGTTGTTATCACAGTACAATTTTTTTTTGAGACGGAGTCTCGCTTTATCGCCCAGGCTGAAGTGCGGTAGCGGGATCTCAGCTCACTGCAACCTCTGCCTCCCAGGTTCAAGCGATTCTTGTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCGCCTGCCACCACGCCCGGCTAATTTTTGTATTTTTAGTAGAGATGGGGTTTCACCATGTTGGCCAGGCTGGGCTCGAACTCCCGACCTGAGGTGATCCGCCCACCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGCGCCTGGCCCACAGTAAAATTTTTGAGCATTTACATGACATTTTATATTTGCCATGCATCAAGTATGCCTATTTTTTGCTTGATCATAGCATCACTTTCTTGGAAGGCAGCAAGACTAAGATATCATACTGATGTTTAAAAATATTAATGATTGGCTGGGGGCGGTGGCTCACGCCTGTAATCTCAGGACTTTGGGGGACCGAGGCGGGAAATCATCTGAGGTCAGGAGTTCGAGACCAGCCTGGCCAACATGGTGAAACCCTGTCTCTACTAAAAACACAAAAAAGTAGCTGGGCGTGGTTGCGCACCTGTAGTCCTAGCTACTCGGGAGGCTGAAGCAGGAGAACCACTTGAACCTGGGAGGCGGAGGTTGCAGTGAGCCAAGATCGCGCCATTGCACTCCAGCCTGGGCGACAGAGCAAGAATCTGTCTCAAAAAAAAAAAAAAAAAAAAAAAAACCATTAATGATGTTAAATATCAGCTTTTACTGGGAAGGGGATCATCCCTCAACAACTGGATTTGTTGTGGTGGTGGTGGTAGTGGTTTGCATCTCGGGAAAATTTTGCACCCAGAATGCTACAGCTGTAGGGATATTTACAGAGCATCTAATTCAATTCCTTAGTTTCATCCATTAGGAAACAAGCCCTGAAGGGGAACTGACTGGCTCATTGCTTCATAAGTGAGTTTTAGAGTTCTAACAGGAATCCCTGCCAACTTACCTCAACTGTCATTCTTTAGACTAATACCATACTTGGGAGGAAGATCCAAAAGTGTCTAGAATTTTACTTTTGGTATTGATATGTTAGATATGTTATGAATGTGTCGAGGCTTGCTGACATAATAATGGCTTTATGGACTTTTTCTCCTCAG
Seq C2 exon
AGTACAGAGTATTTTAATCTTTAGGGGATCAAGATGTCAGATGCAAACAAAGCTGCCATTGCAGCAGAAAAGGAAGCTCTGAACTTGAAGTTACCCCCCATTGTCCATCTCCCAGAAAACATAGGCGTTGATACACCAACACAAAGTAAGCTGCTAAAATACAGAAGATCCAAGGAGCAGCAGCAGAAAATTAATCAGTTAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000174844:ENST00000613504:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.281
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCAGCTACTCGTTTGAGAGC
R:
AACTGATTAATTTTCTGCTGCTGCT
Band lengths:
342-1635
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development