RnoINT0048729 @ rn6
Intron Retention
Gene
ENSRNOG00000059865 | Dnah12
Description
dynein, axonemal, heavy chain 12 [Source:RGD Symbol;Acc:619990]
Coordinates
chr16:2380096-2380489:+
Coord C1 exon
chr16:2380096-2380172
Coord A exon
chr16:2380173-2380286
Coord C2 exon
chr16:2380287-2380489
Length
114 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
3' ss Seq
TATAAACTTTCTCTTTGCAGAGT
3' ss Score
10.87
Exon sequences
Seq C1 exon
CAAGTGGCTAGCAGAGCTGTGTTTAGAATTCCTGCCCACTCCTCTCAACTGCCATTCTTTAACCACTACCGCACTTG
Seq A exon
GTAAGTAAATCTGAACAGCTGGGGTTTTAGTTACCGTACCGGTGTGTAACATACACCGGATATATTCAGGCTTAATTTCATACAATAATGGCTTTATAAACTTTCTCTTTGCAG
Seq C2 exon
AGTATAGAGTATTTAGATCCTTAGGAGACCAAGATGTCAGATCCTAACAAAACTGCCATTACAGCAGAAAAGGAAGCTTTGAACTTGAAGTTGCCCCCTATTGTTCATCCCCCCAAAAACATAGGTGTTGACACACCAAAACAAAGTGAGTTGCTAAATTACCGAAGATCTAAGGAACAGCAGAAGAAAATCAATCAATTAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000059865:ENSRNOT00000079215:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.579
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTGTGTTTAGAATTCCTGCCC
R:
TGCTGTTCCTTAGATCTTCGGT
Band lengths:
245-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]