MmuINT1008740 @ mm10
Intron Retention
Gene
ENSMUSG00000021879 | Dnah12
Description
dynein, axonemal, heavy chain 12 [Source:MGI Symbol;Acc:MGI:107720]
Coordinates
chr14:26693274-26693615:+
Coord C1 exon
chr14:26693274-26693297
Coord A exon
chr14:26693298-26693412
Coord C2 exon
chr14:26693413-26693615
Length
115 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGA
5' ss Score
8.85
3' ss Seq
TATGAACTTTTTCTTTTCAGAGT
3' ss Score
9.73
Exon sequences
Seq C1 exon
ATTCTTTAACTACTACCATACTTG
Seq A exon
GTAAGAGAATCTGGACAGCTATGGATTTTGTTTACAGTACCGATGTGTAAGATACACTGAATATATTCAGGCTTGATCTCATACAATAATGGCTGTATGAACTTTTTCTTTTCAG
Seq C2 exon
AGTATAGTGTGTTTTAATACTCAGGAGACCAAGATGTCAGATCCTAACAAAACTGCCATTGCAGCAGAAAAGGAAGCTTTGAACTTGAAGTTGCCCCCCATTGTTCAACCCCCCAAAAACATAGGGGTCGACACACCAAAACAGAGTGAGCTGCTAAAGTACAGACGGTCTAAGGAGCAGCAGAAGAAGATCAATCAGTTAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021879:ENSMUST00000022433:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.561
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types