HsaINT0049534 @ hg19
Intron Retention
Gene
ENSG00000187775 | DNAH17
Description
dynein, axonemal, heavy chain 17 [Source:HGNC Symbol;Acc:2946]
Coordinates
chr17:76501375-76502928:-
Coord C1 exon
chr17:76502802-76502928
Coord A exon
chr17:76501528-76502801
Coord C2 exon
chr17:76501375-76501527
Length
1274 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGC
5' ss Score
8.99
3' ss Seq
CGCTTCTTGCCTCCTCCCAGGTG
3' ss Score
10.58
Exon sequences
Seq C1 exon
CTTGGCCATCTGTGAAAAGGCTTTGGCAGAGTATTTAGAGACGAAAAGACTGGCTTTCCCCCGGTTCTATTTTGTCTCCTCGGCTGACCTCCTGGACATTCTCTCCAATGGCAATGACCCCGTGGAG
Seq A exon
GTAGGCGGGGCCCCTTGCATTCCGGTGTTTAAGCCAACATCATGCCAGACCCCAGGTGGGCACCTCTACCTCAACCGCCCTAGGGTGGGGTAAGTGTCCTTGGACGTGCCCCATCATCTCCAGGAGGCCCTCTGCACCAGAAGCTGCCCTGGGGTCCCCAGCCATGGCAGAAACGTGGCAGGACTCGCCTCACATCCTGCTCTGCACTTGGCCTGGCTTTTGAGAAGTTAATTTGCCTCTCTGTGCCTCATTTTCCCCTTCTAGAAAATGGGTCGTATGCCAGAGGCTTAGTAAGACACTGTTTCTGAAAGACACACCTCTCAGTGGGTCTTGCTCTGGTCAGCTGGTTAAATCTCAGGGTCCCAAGAGCAAGGAACAGGTGCCTCCTTGGGGCTATTCTAAAAGAGAAAAGAGGTCAGGCACAGTGGCTCACACCTGTAATCCCAGCTACTCAGGAGGCTGTGGCATGATAATTGCTTGAACCCGAGAGGCAGAGGGTTGCCGTGAGCCAAGATCGCACCACTGCACTCCAGCCTGGGCGACAGAGTGAGACTCTGTCTCAAAAAAAAAAAAAAAAAATTAACTAGGTGAAGGGAAAGCGCTTGCATTTTATTTTGACCGTAAGGTTAGAGGTTACACAAGAAGAAGGGATATGCAAGAATAGACTGAGTGTGTGGCTTGGGATCTGGGACAGAACCTTCTCAAAAAGAAGAAATCTTATTTATTAATTTTTTTTATTTTGAGATGGAGTTTCGCTCTTGTTGCCCAGGCTGGAGTGCAATGGCGCGATCTCGGCTCACCACAACCTCTGCCTCCTGGGTTCAGGTGATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGATTACAGGCATGCACCACCACGTCTGGCTAAGTTTGTATTTTTAGTAGAGATGGGGTTTCTCCACATTGGTCAGGCTGGTCTCGAACTCCTGACCTCGGGTGATCCACCTGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGTGTGAGCCACCATGCCCCACCAAAAAGAAATCTTCCAGAATGGATGTTTGGCTTAGAAGGGCTGCGGTTCCTGGCCTGGTTTCTGTGTCCTGACTCAGAGCAGTCTTCGCTGGTTCCTTTTGTTGACTTAGTCATGTTTAGTCAACGTTGATCAAAGATGGGGAGTATATTCCAAAAAGAACGATGCCTAAAACCACCCACGGAAAGCCCAAGCCACGCACATGCCTTTCAAATCCCCCGTTGCATAATTCCCGCTTCTTGCCTCCTCCCAG
Seq C2 exon
GTGAGCCGCCACCTGTCCAAACTCTTCGATAGCCTGTGTAAACTGAAGTTCCGGCTCGATGCCAGTGACAAACCTCTCAAGGTGGGCCTGGGAATGTACAGCAAGGAGGACGAGTACATGGTTTTTGATCAGGAATGCGACCTCTCGGGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000187775-DNAH17:NM_173628:30
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=FE(10.1=100)
A:
NA
C2:
PF083938=DHC_N2=FE(12.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCCATCTGTGAAAAGGCTT
R:
CGAGAGGTCGCATTCCTGATC
Band lengths:
272-1546
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)