DreINT0058302 @ danRer10
Intron Retention
Gene
ENSDARG00000062630 | dnah9l
Description
dynein, axonemal, heavy polypeptide 9 like [Source:ZFIN;Acc:ZDB-GENE-050506-1]
Coordinates
chr6:10427173-10427600:-
Coord C1 exon
chr6:10427474-10427600
Coord A exon
chr6:10427338-10427473
Coord C2 exon
chr6:10427173-10427337
Length
136 bp
Sequences
Splice sites
5' ss Seq
CAGGTTGCT
5' ss Score
-0.98
3' ss Seq
TGTGTGTGTATAACACACAGGTG
3' ss Score
6.6
Exon sequences
Seq C1 exon
GCTGTCAGTGTGCGAGAAGGCACTGGCTGAATATTTGGAGACGAAGCGTTTGACATTTCCACGCTTTTACTTCGTCTCGGCTAGTGACCTGCTGGAAATAGTTTCTAAGGGAACTCAGCCCAGACAG
Seq A exon
GTTGCTGTTATATTAAAACAGTTTAAATAAAAAAATACTTGTGTGTGTGTGTGTGTGTGTGTGTAACCGTAAAACAATGTGTGCAATAATTCTGTGTTTGTGTGTGAATGTATCCGTGTGTGTGTATAACACACAG
Seq C2 exon
GTGACAAGACACTTACTGAAACTCTTTGACAATCTGGCTGACCTCAGCTTTAAGGAAGAGAAAGACAATGGAGAATTAGATCCCCAGACAACTATTGCCTTGGGAATGTACAGTAGAGAGGGAGAGTATGTGCCCTTCTCACAGCCCTGTGTGTGTGAGGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000062630:ENSDART00000150908:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.036
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=FE(10.0=100)
A:
NA
C2:
PF083938=DHC_N2=FE(12.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAGAAGGCACTGGCTGAATA
R:
GGGCACATACTCTCCCTCTCT
Band lengths:
250-386
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]