HsaINT1011403 @ hg38
Intron Retention
Gene
ENSG00000187775 | DNAH17
Description
dynein axonemal heavy chain 17 [Source:HGNC Symbol;Acc:HGNC:2946]
Coordinates
chr17:78505293-78506846:-
Coord C1 exon
chr17:78506720-78506846
Coord A exon
chr17:78505446-78506719
Coord C2 exon
chr17:78505293-78505445
Length
1274 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGC
5' ss Score
8.99
3' ss Seq
CGCTTCTTGCCTCCTCCCAGGTG
3' ss Score
10.58
Exon sequences
Seq C1 exon
CTTGGCCATCTGTGAAAAGGCTTTGGCAGAGTATTTAGAGACGAAAAGACTGGCTTTCCCCCGGTTCTATTTTGTCTCCTCGGCTGACCTCCTGGACATTCTCTCCAATGGCAATGACCCCGTGGAG
Seq A exon
GTAGGCGGGGCCCCTTGCATTCCGGTGTTTAAGCCAACATCATGCCAGACCCCAGGTGGGCACCTCTACCTCAACCGCCCTAGGGTGGGGTAAGTGTCCTTGGACGTGCCCCATCATCTCCAGGAGGCCCTCTGCACCAGAAGCTGCCCTGGGGTCCCCAGCCATGGCAGAAACGTGGCAGGACTCGCCTCACATCCTGCTCTGCACTTGGCCTGGCTTTTGAGAAGTTAATTTGCCTCTCTGTGCCTCATTTTCCCCTTCTAGAAAATGGGTCGTATGCCAGAGGCTTAGTAAGACACTGTTTCTGAAAGACACACCTCTCAGTGGGTCTTGCTCTGGTCAGCTGGTTAAATCTCAGGGTCCCAAGAGCAAGGAACAGGTGCCTCCTTGGGGCTATTCTAAAAGAGAAAAGAGGTCAGGCACAGTGGCTCACACCTGTAATCCCAGCTACTCAGGAGGCTGTGGCATGATAATTGCTTGAACCCGAGAGGCAGAGGGTTGCCGTGAGCCAAGATCGCACCACTGCACTCCAGCCTGGGCGACAGAGTGAGACTCTGTCTCAAAAAAAAAAAAAAAAAATTAACTAGGTGAAGGGAAAGCGCTTGCATTTTATTTTGACCGTAAGGTTAGAGGTTACACAAGAAGAAGGGATATGCAAGAATAGACTGAGTGTGTGGCTTGGGATCTGGGACAGAACCTTCTCAAAAAGAAGAAATCTTATTTATTAATTTTTTTTATTTTGAGATGGAGTTTCGCTCTTGTTGCCCAGGCTGGAGTGCAATGGCGCGATCTCGGCTCACCACAACCTCTGCCTCCTGGGTTCAGGTGATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGATTACAGGCATGCACCACCACGTCTGGCTAAGTTTGTATTTTTAGTAGAGATGGGGTTTCTCCACATTGGTCAGGCTGGTCTCGAACTCCTGACCTCGGGTGATCCACCTGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGTGTGAGCCACCATGCCCCACCAAAAAGAAATCTTCCAGAATGGATGTTTGGCTTAGAAGGGCTGCGGTTCCTGGCCTGGTTTCTGTGTCCTGACTCAGAGCAGTCTTCGCTGGTTCCTTTTGTTGACTTAGTCATGTTTAGTCAACGTTGATCAAAGATGGGGAGTATATTCCAAAAAGAACGATGCCTAAAACCACCCACGGAAAGCCCAAGCCACGCACATGCCTTTCAAATCCCCCGTTGCATAATTCCCGCTTCTTGCCTCCTCCCAG
Seq C2 exon
GTGAGCCGCCACCTGTCCAAACTCTTCGATAGCCTGTGTAAACTGAAGTTCCGGCTCGATGCCAGTGACAAACCTCTCAAGGTGGGCCTGGGAATGTACAGCAAGGAGGACGAGTACATGGTTTTTGATCAGGAATGCGACCTCTCGGGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000187775:ENST00000585328:30
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=FE(10.1=100)
A:
NA
C2:
PF083938=DHC_N2=FE(12.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCCATCTGTGAAAAGGCTT
R:
CGAGAGGTCGCATTCCTGATC
Band lengths:
272-1546
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains