GgaINT0129587 @ galGal3
Intron Retention
Gene
ENSGALG00000007106 | DNAH17
Description
NA
Coordinates
chr18:9749646-9750106:+
Coord C1 exon
chr18:9749646-9749772
Coord A exon
chr18:9749773-9749953
Coord C2 exon
chr18:9749954-9750106
Length
181 bp
Sequences
Splice sites
5' ss Seq
GAGGTATGG
5' ss Score
8.98
3' ss Seq
CCTGCTGCTGCTGCCCACAGGTG
3' ss Score
11
Exon sequences
Seq C1 exon
GCTGGCGGTCTGTGAGAAGGCTCTGGCCGAATACCTGGAGACAAAGCGACTGGCCTTCCCCAGGTTCTACTTCGTTTCCTCCGCGGATCTGCTTGACATTCTATCTAATGGGAACGAGCCAACTGAG
Seq A exon
GTATGGGCTGAGCACAAACCAGGAGGCGCAGCCCACCTCAATCACGTCCTGACATATTGCAGATGTCTTAAAATCTCCGAACTGAACAGTGTCCCTGACCCGCTGCGGCACAGGGATGCAGCACCCTGAGCTGCAAAACGCCCTCTGACCCCAATGGGGCTCCTGCTGCTGCTGCCCACAG
Seq C2 exon
GTGTCCCGTCACCTCTCGAAGCTGTTTGACAGTCTCGCTAAGCTGAAGTTCAAGATGAGCCCGGACAAAAAGCCGCTGAAGACGGCCCTGGGGATGTTCAGCAAAGAGGAGGAGTTTGTGCCGCTGAGCGCAGAGTGCGATCTGTCCGGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007106:ENSGALT00000011513:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=FE(11.2=100)
A:
NA
C2:
PF083938=DHC_N2=FE(13.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGTCTGTGAGAAGGCTCTGG
R:
CGGCACAAACTCCTCCTCTTT
Band lengths:
245-426
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]