BtaINT0050343 @ bosTau6
Intron Retention
Gene
ENSBTAG00000000920 | DNAH17
Description
dynein, axonemal, heavy chain 17 [Source:HGNC Symbol;Acc:HGNC:2946]
Coordinates
chr19:54351034-54351992:+
Coord C1 exon
chr19:54351034-54351160
Coord A exon
chr19:54351161-54351839
Coord C2 exon
chr19:54351840-54351992
Length
679 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGC
5' ss Score
8.99
3' ss Seq
CCTCCGACCCTGAAATCCAGGTG
3' ss Score
5.25
Exon sequences
Seq C1 exon
GTTGGCTGTGTGCGAAAAGGCCTTGGCCGAATATTTAGAGACAAAAAGACTGGCTTTCCCCAGGTTCTACTTTGTCTCTTCAGCTGACCTCCTGGACATTCTTTCCAACGGAAATGACCCCGTGGAG
Seq A exon
GTAGGCGGGCCCCTGATGGTCCGAAGGGGTGCCAGGCCCCATGTCCGGGTGGCCCCGGGATGTTGGAGTGTCCGAGAGGTGGTCCACACCAGAAACCGCCCAGGGGCCGGGCCGTGACAGAAGGACCCGGGACCGCTCTCAGAGCCCGCCCTTCCCTCCCTGAGCGCCATCATTGTGCTCTGGAAAATGGGCGAGATGCCCGTTTCTAAGACACATGCTGCTCATCCTGCCAAACCCCAGACACCGGGAGGAAAAGGTCCCGCGAGGCTCCTCTTCTAAAAGAGAGAAGGGCGAGCATCCGGGCAAAGGGAGGGGACCGTGTTTTATTCTAATCATGGGGTTGCAGATGCACGGTATGGGAGCCCCAAGGCGGCCCACAGTTTAGGTTCTGAGCATCTGACTTAGGGGCATAGGCCCCGTGCCCCCTGGGTCAGAACCTTCTCAGGGAAGAGAAGAAACAGACATTCAGAAGATTCTGCCGAGCAGCGCTTGCTGTTTCCTTTGTTGGTGAAGTGTGTTTAATCAGCATCCCAGAGGTGGGGGGTCGGGGAGGGGGGAGAATAAATTTAAAAAAAATGATGCTTAAGACCACCCAAGGGAGACCCAGGCCATGGGCATCCACCTGTGAGCCCCTGGGTTGCAAAATCCAATGTCCTCCCCCTCCGACCCTGAAATCCAG
Seq C2 exon
GTGAGCCGCCATCTGTCCAAGCTCTTCGACAGCCTGTGTAAACTGAAGTTCCGCCTGGACGCCAGTGGGAAGCCGCTCAAGTTCGGCCTGGGCATGTATAGCAAGGAGGACGAGTATGTGGACTTTGACCAGGAGTGCAACCTCTCGGGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000920:ENSBTAT00000022637:29
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=FE(10.1=100)
A:
NA
C2:
PF083938=DHC_N2=FE(12.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTGGCTGTGTGCGAAAAGG
R:
AGAGGTTGCACTCCTGGTCAA
Band lengths:
272-951
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development