HsaINT0049717 @ hg19
Intron Retention
Gene
ENSG00000158486 | DNAH3
Description
dynein, axonemal, heavy chain 3 [Source:HGNC Symbol;Acc:2949]
Coordinates
chr16:20990652-20994236:-
Coord C1 exon
chr16:20994043-20994236
Coord A exon
chr16:20990869-20994042
Coord C2 exon
chr16:20990652-20990868
Length
3174 bp
Sequences
Splice sites
5' ss Seq
AGAGTAAGT
5' ss Score
9.35
3' ss Seq
CGCCTTGGTGTCCTCGGCAGGGT
3' ss Score
7.81
Exon sequences
Seq C1 exon
GTAATTAACAAAATCTCCTTTTCATTAGCCATGAGTCCAATAGGGGATGCCTTCAGGAACCGCCTGCGGATGTTCCCTTCGCTGATCAATTGCTGTACGATTGATTGGTTCCAGTCCTGGCCCACAGATGCCCTAGAGTTGGTGGCTAACAAATTTCTAGAGGATGTGGAGCTTGATGACAACATTCGGGTAGA
Seq A exon
GTAAGTGTTGATTGCATTTTAGGACTCTAGATATTCCAAATTTGAAGTCCAGACGCTGGCTCTATTTTTGTTGTTGTTTTGAAGATTTCTCAATTTGTATATAGCAAATGTCTTATGCTTTTAAATTGAATCACAGTTAGTTAGATATTTAATAAAGCATCTTGTCTGTAAAAGAAGAAAATTTCATTGTTCAGAATTGTCCTGGAGATTTGTCCTAGCTATGAGAACCTGGAATAATGATATAGCTATTTCAGTAGTCCTAGAATATGCATTCTCAACAGGAAGAAGATTGCTGCTGAGACCACAAAACAATGTTTGTTTGTTTATTTGTTTTTGAGATGGAGTCTTGCTCTATCCCCCAGGCTGGAGTTCCTTGGTGCAATCTCAGCTCACAGCAACCTCTGCCTCCCAGATTCAAGTGATTCTCATGCCTCAGCCTCCCCCAAGCAGCTGGGATTACAGGCACCTGCCATCACGTCCAGCTAATTTTTATATTTTTACTAGATATGGGGTTTCGCCATGTTGGCCAGGGTGGTCTCGAACTCCTGACCTCACGTAATCTGCCCGCCTTGGCCTCCCAAAGTGCTGGGAATACAGGTGTGAGCTACTGCACCTGGCAAAAATTAGTTCCTATAAGGGTGAAAATTTACTCTTTTATGTATAAAGCACATATATATATGTGCTTTATTATATATATATACTTAATTATATATATTATATATTATATATGTGCTTTATATATATGCTTTATTATATATAATATATGTGCTTTATACACTTTATGTATGTATATATGCATACATATATAAAAAAAGCATTTTATTTGGCTAGAGTAAGGGAAGAGGTGAGAATATCAGTCATTCTGGATGTTCCATGAAGGCTAGAGATCAGTCAACCTTGTCTACCTCTGTTTCCTTAGTTTCTAGAAGGTGCTTGGCACACAGTAGGTTCAATCATTGTTTATTTTATTTATTTATTTATTTATCTATTTATTTTGAGATGGAGTCTCACTCTGTCGCCCAGGTTGGAGTGCAGTGGTGCGATCTCGGCTCACAGCAACCTCCGCCTCCCGGGTTAATGCGATTCTTGTGCCTCAGCCTCCCGAGTAGCTGAGATTACAGGTGTGAGCCTCCATGCCCAGCTAATTTTTGGATTTTTAGTGGACACTGGGTTTCACCATGTTGGCCAGGCTCAACTGACCTTAAGTGATTTGCCCACCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGCACCCAGGCTCAATCACTGTTTGTTGAATTAATGGATGAAAAATGAGGAAGTAGGTAGGGGTAAGAGTGTCAATGGCCTTAAATTCCATTTGGGGTATTTTGAACTTTATTATCTAGACCAGAAGACCCTTAACCTGGGTCCACGTGCTTGTGGGTAGAATTCAGTGGGTGGATGAATATGAATGGGAAACATTACATCTTCATTTCCAATGACATCCAACTGGTACTTTGCATTTCCTCCAGTTATGAATGTAGGCAGTAAACCCCAGTGGGATGAGCAGGGCCTGACTTTGTTACCAGTAGGAATCAGTTCTTTGCAGAACTCATTGCATCATTACAGTTAACTCAGTGTATAATTTTCTTCGAATTGATGGTGCTTTTTAGACCTGCTGCCCACTCTTGTTATTTAATGCAGAAGCTGACAAACTATGGTTCATGGGCCTAGTTGAATTCACCCTGCTTTTGTAAATAAAGTTTTATTGGAATGCACGCATGCCCATTAGTTTACACACCATCTGTGGCTGTTTTTGCACTAAAATGGCAGAGTTGAGTAACTGTGACAGATATCATGTGGTCCACAAAGGCTAAAATATTTATTATCTGACCCTTTCCAGAAAAGGTTTACTAATCCCTGATTTAATGCCTCAGTAAAGCAGCATGTATATTACTATATTACAAATTTTAAAATATTTTAAAACATTTCAAAAAGTCTATTTCAATATAATTGGTTTCCATGGTAATTCTGTGTTTTATTTTATGCATTTTTAAAAATTGGCTGGGCATGGTGTTTCATGCCTATAATCCCAGCACTTTGGGAGGCCAAGGCTGGTGGATCACTTGAGGTCGAGAATTCCAGACTAGCCTGGGCAACATAGCAACCCCTACCCCACCCCCCACCATCTCTACTAAAAGTGCAGAAGATTAGCTGGGTGTGGTGGTGTGTGCCTGAGACTTCAGCTACTCAGGAGGCTGAGGTGGGAGGATCACTTGAGCCAGGGAGGTTAAGGCTACAGTGAGCCATGATTGTGCCACTGCACTCCAGCCTGGATGACAGAGTGCAATCCTGTCTCTCTCTCTCCCCCCCCACATATATATATATTTATATATAAATAAATATAATAAAATATAATATAGTATATATTATAATATATAATATAATATATGATGTATATTATAATATATGATGTATATTATAATATAATATATGATGTATATTATATATATAATATAAATAAATAATATAAATAATATAAATAAATATATAATAAAATTATATATATATATATATATTTTTTTTTCTACAAAGTCAGGGAATATCTCCAAACTACCAAAGTTTAGGAATTCCTGCTTAAGCCCTGGTGATTCATCAAAGGGATCAGTGATAGAAATGACTTGATCAAAGACCATTTGTGGCTGGGCGTGGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGTGGGCAGATCACCTGAGGTCAGGAGTTTCAGACTAGCCTGACCAACATGGTGAAACTCTGCCTCTACTGAAAATAGAAAAATTAGCTGGGCGTGGTGGCACATGCCTGTAATCCCAGCTACTCGGGAGGCTGAAGCAGGAAAATCACTTGAGCCTGGGAGGCAGAGGTTGCAGCGAGCTGAGATCGCGCCACTGCACTCCAGCCTGGGTGTCAGAGAGAGACACTGTCTCAATAAATAAATATAAAATCATTTGTGTGAGAGTATGCACCTATGTACCTGCCCCATCCTTCTCTGCCTCAGCTCTGTTGACATGTCCTCAGAGAGTTTGGATTCTAACGTGTCACAGTCAGTGTATGTGCCTTCTCATATCCTCATGTCTATAACTAAAGCTGTACTGGATCTCCCTGGAAGATGTTGGGTCCTGCCTAACCGCCTTGGTGTCCTCGGCAG
Seq C2 exon
GGTCGTGTCCATGTGCAAATATTTCCAAGAGAGCGTCAAGAAGCTGTCACTCGATTATTACAACAAACTTCGAAGACACAACTATGTTACCCCCACCTCCTACCTTGAATTGATTCTAACCTTCAAGACGCTCCTGAATAGCAAGAGGCAAGAGGTGGCTATGATGAGGAACCGCTACCTGACAGGCTTGCAGAAACTCGACTTTGCAGCTTCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000158486-DNAH3:NM_017539:49
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127802=AAA_8=FE(23.7=100)
A:
NA
C2:
PF127802=AAA_8=PD(16.7=61.6),PF127772=MT=PU(4.3=20.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)