GgaINT0013866 @ galGal3
Intron Retention
Gene
ENSGALG00000002350 | DNAH3
Description
NA
Coordinates
chr14:15714641-15715334:-
Coord C1 exon
chr14:15715169-15715334
Coord A exon
chr14:15714858-15715168
Coord C2 exon
chr14:15714641-15714857
Length
311 bp
Sequences
Splice sites
5' ss Seq
AGAGTATGA
5' ss Score
1.79
3' ss Seq
CGCAGAAAATTTTTCTCTAGGGT
3' ss Score
5.36
Exon sequences
Seq C1 exon
CAATGAGCCCTATTGGTGATGCATTTCGGAATCGATTACGGATGTTCCCATCGCTGATAAACTGTTGCACCATTGACTGGTTCCAAACCTGGCCTGCAGATGCTTTGGAAATGGTTGCTAACAAGTTTTTAGAGGATGTTGAACTTGAAGATGACATTAGAACAGA
Seq A exon
GTATGAGTTTATTTGTCAAGAAACATGATGCAAATGTTTACCTCCCCCTTATCAGGCCTACATGACCAGGACACTGTCCGTATAAGTGGGTGAGGCTAAACCACCTCTTTGATTAGAGTGCAAGCCAAAAGCATCTGGATATACATATCAGAGCACACTCTTTGAAAGGAGTCTAAAATATTTCATGTAGTAGGGAAAAACAATTCTGCCTTAACTAACACTGATACGATTTCATAGGCTTAATTTCCTCATTATTAATTCATGTAAAGAGAGATGATTTTTACATAGTAACGCAGAAAATTTTTCTCTAG
Seq C2 exon
GGTTGTGTCAATGTGCAAATATTTCCAAGAAAGTGTGAGAGAGCTCTCCATCAACTATTACAGTAGACTGCGAAGGCACAACTACGTAACGCCAACATCATACCTAGAGCTGATTCTTACCTTTAAAACTCTGCTGATAAGCAAAAGGCAAGAAGTTGACACAATGAGAAATCGTTATCTTACAGGGCTTCAAAAACTTGACTTTGCATCTTCACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002350:ENSGALT00000003708:49
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127802=AAA_8=FE(20.4=100)
A:
NA
C2:
PF127802=AAA_8=PD(16.7=61.6),PF127772=MT=PU(4.3=20.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTGATGCATTTCGGAATCGA
R:
AGTCAAGTTTTTGAAGCCCTGT
Band lengths:
356-667
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]