HsaINT1011481 @ hg38
Intron Retention
Gene
ENSG00000158486 | DNAH3
Description
dynein axonemal heavy chain 3 [Source:HGNC Symbol;Acc:HGNC:2949]
Coordinates
chr16:20979330-20982914:-
Coord C1 exon
chr16:20982721-20982914
Coord A exon
chr16:20979547-20982720
Coord C2 exon
chr16:20979330-20979546
Length
3174 bp
Sequences
Splice sites
5' ss Seq
AGAGTAAGT
5' ss Score
9.35
3' ss Seq
CGCCTTGGTGTCCTCGGCAGGGT
3' ss Score
7.81
Exon sequences
Seq C1 exon
GTAATTAACAAAATCTCCTTTTCATTAGCCATGAGTCCAATAGGGGATGCCTTCAGGAACCGCCTGCGGATGTTCCCTTCGCTGATCAATTGCTGTACGATTGATTGGTTCCAGTCCTGGCCCACAGATGCCCTAGAGTTGGTGGCTAACAAATTTCTAGAGGATGTGGAGCTTGATGACAACATTCGGGTAGA
Seq A exon
GTAAGTGTTGATTGCATTTTAGGACTCTAGATATTCCAAATTTGAAGTCCAGACGCTGGCTCTATTTTTGTTGTTGTTTTGAAGATTTCTCAATTTGTATATAGCAAATGTCTTATGCTTTTAAATTGAATCACAGTTAGTTAGATATTTAATAAAGCATCTTGTCTGTAAAAGAAGAAAATTTCATTGTTCAGAATTGTCCTGGAGATTTGTCCTAGCTATGAGAACCTGGAATAATGATATAGCTATTTCAGTAGTCCTAGAATATGCATTCTCAACAGGAAGAAGATTGCTGCTGAGACCACAAAACAATGTTTGTTTGTTTATTTGTTTTTGAGATGGAGTCTTGCTCTATCCCCCAGGCTGGAGTTCCTTGGTGCAATCTCAGCTCACAGCAACCTCTGCCTCCCAGATTCAAGTGATTCTCATGCCTCAGCCTCCCCCAAGCAGCTGGGATTACAGGCACCTGCCATCACGTCCAGCTAATTTTTATATTTTTACTAGATATGGGGTTTCGCCATGTTGGCCAGGGTGGTCTCGAACTCCTGACCTCACGTAATCTGCCCGCCTTGGCCTCCCAAAGTGCTGGGAATACAGGTGTGAGCTACTGCACCTGGCAAAAATTAGTTCCTATAAGGGTGAAAATTTACTCTTTTATGTATAAAGCACATATATATATGTGCTTTATTATATATATATACTTAATTATATATATTATATATTATATATGTGCTTTATATATATGCTTTATTATATATAATATATGTGCTTTATACACTTTATGTATGTATATATGCATACATATATAAAAAAAGCATTTTATTTGGCTAGAGTAAGGGAAGAGGTGAGAATATCAGTCATTCTGGATGTTCCATGAAGGCTAGAGATCAGTCAACCTTGTCTACCTCTGTTTCCTTAGTTTCTAGAAGGTGCTTGGCACACAGTAGGTTCAATCATTGTTTATTTTATTTATTTATTTATTTATCTATTTATTTTGAGATGGAGTCTCACTCTGTCGCCCAGGTTGGAGTGCAGTGGTGCGATCTCGGCTCACAGCAACCTCCGCCTCCCGGGTTAATGCGATTCTTGTGCCTCAGCCTCCCGAGTAGCTGAGATTACAGGTGTGAGCCTCCATGCCCAGCTAATTTTTGGATTTTTAGTGGACACTGGGTTTCACCATGTTGGCCAGGCTCAACTGACCTTAAGTGATTTGCCCACCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGCACCCAGGCTCAATCACTGTTTGTTGAATTAATGGATGAAAAATGAGGAAGTAGGTAGGGGTAAGAGTGTCAATGGCCTTAAATTCCATTTGGGGTATTTTGAACTTTATTATCTAGACCAGAAGACCCTTAACCTGGGTCCACGTGCTTGTGGGTAGAATTCAGTGGGTGGATGAATATGAATGGGAAACATTACATCTTCATTTCCAATGACATCCAACTGGTACTTTGCATTTCCTCCAGTTATGAATGTAGGCAGTAAACCCCAGTGGGATGAGCAGGGCCTGACTTTGTTACCAGTAGGAATCAGTTCTTTGCAGAACTCATTGCATCATTACAGTTAACTCAGTGTATAATTTTCTTCGAATTGATGGTGCTTTTTAGACCTGCTGCCCACTCTTGTTATTTAATGCAGAAGCTGACAAACTATGGTTCATGGGCCTAGTTGAATTCACCCTGCTTTTGTAAATAAAGTTTTATTGGAATGCACGCATGCCCATTAGTTTACACACCATCTGTGGCTGTTTTTGCACTAAAATGGCAGAGTTGAGTAACTGTGACAGATATCATGTGGTCCACAAAGGCTAAAATATTTATTATCTGACCCTTTCCAGAAAAGGTTTACTAATCCCTGATTTAATGCCTCAGTAAAGCAGCATGTATATTACTATATTACAAATTTTAAAATATTTTAAAACATTTCAAAAAGTCTATTTCAATATAATTGGTTTCCATGGTAATTCTGTGTTTTATTTTATGCATTTTTAAAAATTGGCTGGGCATGGTGTTTCATGCCTATAATCCCAGCACTTTGGGAGGCCAAGGCTGGTGGATCACTTGAGGTCGAGAATTCCAGACTAGCCTGGGCAACATAGCAACCCCTACCCCACCCCCCACCATCTCTACTAAAAGTGCAGAAGATTAGCTGGGTGTGGTGGTGTGTGCCTGAGACTTCAGCTACTCAGGAGGCTGAGGTGGGAGGATCACTTGAGCCAGGGAGGTTAAGGCTACAGTGAGCCATGATTGTGCCACTGCACTCCAGCCTGGATGACAGAGTGCAATCCTGTCTCTCTCTCTCCCCCCCCACATATATATATATTTATATATAAATAAATATAATAAAATATAATATAGTATATATTATAATATATAATATAATATATGATGTATATTATAATATATGATGTATATTATAATATAATATATGATGTATATTATATATATAATATAAATAAATAATATAAATAATATAAATAAATATATAATAAAATTATATATATATATATATATTTTTTTTTCTACAAAGTCAGGGAATATCTCCAAACTACCAAAGTTTAGGAATTCCTGCTTAAGCCCTGGTGATTCATCAAAGGGATCAGTGATAGAAATGACTTGATCAAAGACCATTTGTGGCTGGGCGTGGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGTGGGCAGATCACCTGAGGTCAGGAGTTTCAGACTAGCCTGACCAACATGGTGAAACTCTGCCTCTACTGAAAATAGAAAAATTAGCTGGGCGTGGTGGCACATGCCTGTAATCCCAGCTACTCGGGAGGCTGAAGCAGGAAAATCACTTGAGCCTGGGAGGCAGAGGTTGCAGCGAGCTGAGATCGCGCCACTGCACTCCAGCCTGGGTGTCAGAGAGAGACACTGTCTCAATAAATAAATATAAAATCATTTGTGTGAGAGTATGCACCTATGTACCTGCCCCATCCTTCTCTGCCTCAGCTCTGTTGACATGTCCTCAGAGAGTTTGGATTCTAACGTGTCACAGTCAGTGTATGTGCCTTCTCATATCCTCATGTCTATAACTAAAGCTGTACTGGATCTCCCTGGAAGATGTTGGGTCCTGCCTAACCGCCTTGGTGTCCTCGGCAG
Seq C2 exon
GGTCGTGTCCATGTGCAAATATTTCCAAGAGAGCGTCAAGAAGCTGTCACTCGATTATTACAACAAACTTCGAAGACACAACTATGTTACCCCCACCTCCTACCTTGAATTGATTCTAACCTTCAAGACGCTCCTGAATAGCAAGAGGCAAGAGGTGGCTATGATGAGGAACCGCTACCTGACAGGCTTGCAGAAACTCGACTTTGCAGCTTCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000158486:ENST00000261383:49
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127802=AAA_8=FE(23.7=100)
A:
NA
C2:
PF127802=AAA_8=PD(16.7=61.6),PF127772=MT=PU(4.3=20.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains