DreINT0009315 @ danRer10
Intron Retention
Gene
ENSDARG00000068468 | DNAH3
Description
dynein, axonemal, heavy chain 3 [Source:HGNC Symbol;Acc:HGNC:2949]
Coordinates
chr24:39600210-39600674:+
Coord C1 exon
chr24:39600210-39600375
Coord A exon
chr24:39600376-39600457
Coord C2 exon
chr24:39600458-39600674
Length
82 bp
Sequences
Splice sites
5' ss Seq
AGAGTGAGC
5' ss Score
4.22
3' ss Seq
CGTTTCTGCTGTATTCTCAGGGT
3' ss Score
7.93
Exon sequences
Seq C1 exon
CAATGAGTCCAATAGGTGAAGACTTTCGTAACCGTCTGAGGATGTTCCCATCTCTGATCAACTGCTGCACCATAGACTGGTTTCAGGCCTGGCCTAAAGACGCTCTCGAGATGGTCGCCAACAAGTTCCTTGAGGATCTAGACCTGGAAGACGACATCAGGATAGA
Seq A exon
GTGAGCCAGAATTGATCACCTTTATTACCTTAAAATATAGAAAATATAGTTTTACATTGATCCGTTTCTGCTGTATTCTCAG
Seq C2 exon
GGTGGTGGAAATGTGTAAAACCTTCCAGGAGAGTGTGCGAGAGCTGTCCGAGCGTTATTACTCTCAGCTGCGCAGACATAACTATGTCACTCCTACCTCTTACCTGGAGCTCATCCTGACCTTTAAAGCATTGCTCAACTCTAAACGCAGCGAGGTGAATGAGCTCAGGAATCGCTACATAGTCGGTCTGCAGAAACTTGACTTTGCCTCCTCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000068468:ENSDART00000142998:43
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127802=AAA_8=FE(20.4=100)
A:
NA
C2:
PF127802=AAA_8=PD(16.7=61.6),PF127772=MT=PU(4.3=20.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTGGAAGACGACATCAGGA
R:
ACCTCGCTGCGTTTAGAGTTG
Band lengths:
181-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]