HsaINT0049926 @ hg19
Intron Retention
Gene
ENSG00000118997 | DNAH7
Description
dynein, axonemal, heavy chain 7 [Source:HGNC Symbol;Acc:18661]
Coordinates
chr2:196722101-196723528:-
Coord C1 exon
chr2:196723198-196723528
Coord A exon
chr2:196722448-196723197
Coord C2 exon
chr2:196722101-196722447
Length
750 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
ATTAACGTTGTTATTTCAAGGAT
3' ss Score
6.42
Exon sequences
Seq C1 exon
TGAAGTAATGAAAATGAAAAAGAGATATGAAGTGGGTTTGGAGAAACTGGATTCTGCTTCATCTCAAGTAGCCACAATGCAGATGGAGTTGGAGGCACTACATCCTCAATTAAAAGTTGCTAGCAAAGAGGTTGATGAAATGATGATAATGATTGAGAAAGAGTCTGTAGAAGTTGCCAAAACTGAAAAAATAGTGAAAGCTGATGAAACAATAGCGAATGAACAAGCTATGGCTTCCAAAGCCATCAAAGATGAGTGCGATGCTGACCTGGCAGGTGCCTTGCCAATATTAGAGTCAGCACTGGCCGCCCTTGATACTCTTACTGCACAG
Seq A exon
GTAAGAGCTTCGCCATACACTTTCTAGGACACATGTCATCATAGCCCAAGAAAGAAATTAGCATTGTGTTCTAGTCTAGTTTGTCTCTCCGAATTAGCCTGAAATTTTAATGAAGCTGAAATCATTTTGAAATTGGCAAAAGAATTCCCTAATTGACTTGAAAAAGAAATGCATGTGCATGCAAAAACACCTTTGAAATGGAAGAAAGCGGCCAGATGTTATAGCCTACCATAAAGCAACAGTTATTTCAAGAACTTCATACATCTTTGCACTGCAGTAATCAACAAAGACATAAGCTTTGAGATTATATTTTGATTCTAAGGGGTACCTTTTTCATATTTAGACACACTTGTCATTGGAATACATCTTATAGAGCATGTGATAAAGTATTAATTTTGCCAGTGATTTTTTTTGGGGGGATACATAAAATAATAATGTGTTTTATAATAATTTATTTTACAATAGCAATGTCTTAGATTTCATGAGGTGTATTAAAAGTTAAGATGTGAAAGGGGAATATTTTAATTTAGAAAGATGAAGATAGATTTTTAAAATAAATAGTGCAGAGAATTTTGGCTAAACTTTTGGGTGGGACTGAGGAGAAAAGTGTAAGTGCAGTTCTATTACTGTCACCATTTCTACCCAGTGAACACAGTGAGTTTCTGTATGCTTAGTTTGAAAATAGGAACCACTTACAATTACTGTATAAACAAACATGTCTTTTAAAATAATTAACGTTGTTATTTCAAG
Seq C2 exon
GATATTACAGTGGTAAAATCCATGAAGAGTCCTCCTGCTGGTGTCAAGCTTGTTATGGAAGCTATATGCATCTTGAAAGGAATCAAAGCTGACAAAATCCCTGACCCAACAGGTTCAGGGAAAAAAATTGAGGATTTCTGGGGCCCAGCTAAGAGACTTCTTGGTGACATGAGGTTTCTGCAGTCACTTCATGAATATGACAAGGACAATATTCCTCCAGCTTATATGAATATCATAAGAAAAAATTATATTCCAAATCCAGATTTTGTACCAGAAAAAATCAGAAATGCTTCTACAGCGGCCGAAGGTCTGTGCAAATGGGTCATAGCAATGGATTCATATGATAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000118997-DNAH7:NM_018897:43
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127772=MT=PU(29.3=92.8)
A:
NA
C2:
PF127772=MT=FE(32.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCCGCCCTTGATACTCTTA
R:
ACCCATTTGCACAGACCTTCG
Band lengths:
352-1102
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)