DreINT0058166 @ danRer10
Intron Retention
Gene
ENSDARG00000060165 | dnah7
Description
dynein, axonemal, heavy chain 7 [Source:ZFIN;Acc:ZDB-GENE-070912-282]
Coordinates
chr9:25180013-25181663:-
Coord C1 exon
chr9:25181333-25181663
Coord A exon
chr9:25180360-25181332
Coord C2 exon
chr9:25180013-25180359
Length
973 bp
Sequences
Splice sites
5' ss Seq
CAGGTTTTT
5' ss Score
2.93
3' ss Seq
TTTTGTGTCACCCTCTATAGGAT
3' ss Score
10.13
Exon sequences
Seq C1 exon
GGAAGTCATGAAGCTGAAGAGTCGTTATGAGGTTGGTCTTCAGAAGCTGGAATCGGCTGCCACACAGGTGTCCACAATGCAGGGGGAGCTGGAGGCTCTTCAGCCTCAGCTGCGAGTTGCAACTAAAGAGGTGGAAGAGATGATGGTGGTCATTCAGCATGAGTCTGAAGAGGTGTCCAAGACAGAGAAGGTGGTCCGTGTGGATGAAGCGGAGGCTAATGAGCAGGCCATGGCTGCCAAGGCCATTAAAGATGAATGTGACGCCGATCTGGCGGTTGCTGTGCCCATCCTGGAAGCTGCACTGGCTGCTTTGGACACACTCACCCAACAG
Seq A exon
GTTTTTTTCTTGCTTTATAAACCACATGAAATGGTTATAACATTAGATAACTCGCAGAATACATTTTTGAGAGATAATTTACAGTGCTTACCCCCTGACCATTGAAGATATAGATGACTTTCTTCTTTATTAAAAATAAATGAAGATTTTTAGCTGAATTTGTGGTCTTTGGTGAGTAGTATAGTTTAAATCAATGGTCAACCTTTTTTAGATAAAAAAGACGTATAAATAAGTCCAAACCAATCCCTGTGGCTCCTGATGATACACTAGGATGATACACTTTAATCTTTAATCCATAGCCTAGACAAACAGTTCTCGGCACACGCACAAATGTATTGAACATGAGGCTTCCAGTTGCTTGGCGATGTATGCGTTCAGGGGTGAGGTTATTGTCCAAGATGCTATAACTGCTATAAATTACACTCGCACTGAGTGCACGCTCGGCCATATGTCATCAAAAGACCGGAAACTCACACTCACAAGGCTAAGCTAATACATTTGTAAACAATGTTCAATTTCCTACACAAACCAATCGATTCACAAGACATCAGTGTGTTAGCTGGAGCTTTGTTTGAATATGCTTATTTTTAATCTAAAAAAACTGGCTAGCATTCACTGCTATTATATGAATCACCAAAAATCATGGATTCAGCTAAAATATTTTGTAATGTTCTACTGAAGAAAAAAGCCACCTACATCTTGAATGATCTAAGGGTGAGTAAATTAACAGGAAATTTTCATTTTTGGGTGAACTATCCCTTTAAAATGATTAAAACACACACACACACAAACACGCACTCAAAAGATGGTCATCAATGAACAATCAAACACAAATTACTGTACCTTTTTCTGATCCACAGAACAATATTATTTGTTTTATTTTGTGAAATATCACTTTAATTAATAAAAACTAGTAATGTCTTTTGATAATACTACCATTATCTAATAAATCGTTTTGTGTCACCCTCTATAG
Seq C2 exon
GATATAACTCTAGTTAAAGCCATGAAAAATCCTCCAGCTGGTGTCAAACTGGTGATGGAAGCCATCTGCATTCTTAAAGGCATAAAACCAGACCGAATCCCAGACCCTTCAGGTTCCGGCAAGAAGGTTGAAGACTACTGGGGCCCAGCAAAGAAACTATTAGGAGATATGAAGTTTCTCCAGAGCCTTCATGAGTACAATAAAGACAATATTCCAGTCAGCTACATGAGCATTATTCGGAATAAATACATCACCAACCCAGACTTTGTTCCAGAGAAGATCCGCACGGCCTCCGCTGCTGCAGAGGGGCTCTGTAAATGGGTCTGTGCCATGGACTCTTATGATAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000060165:ENSDART00000137131:42
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.072 A=NA C2=0.052
Domain overlap (PFAM):
C1:
PF127772=MT=PU(29.3=92.8)
A:
NA
C2:
PF127772=MT=FE(32.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTTGGACACACTCACCCAA
R:
ACCCATTTACAGAGCCCCTCT
Band lengths:
347-1320
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]