GgaINT0050159 @ galGal3
Intron Retention
Gene
ENSGALG00000007841 | DNAH7
Description
NA
Coordinates
chr7:10701364-10705419:-
Coord C1 exon
chr7:10705068-10705419
Coord A exon
chr7:10701711-10705067
Coord C2 exon
chr7:10701364-10701710
Length
3357 bp
Sequences
Splice sites
5' ss Seq
CAGGTACAT
5' ss Score
7.79
3' ss Seq
TGTGTTTGTATGTTTGTAAGGAT
3' ss Score
5.08
Exon sequences
Seq C1 exon
TAAAGTGCTATTTATTTTCAGTAAGGTGATGGAAATGAAAAGAAGATATGAAGTTGGCTTGGAGAAACTGAACTATGCTACATCTCAAGTCGCCTCGATGCAGTCTGAGCTGGAAGCCCTGCAGCCTCAGCTGCGGGAAGCTAGCAAGCAGGTTGATGAGATGATGGTGGTAATTCAGAAAGAATCCTCAGAAGTAGCCAAAACTGAAGAAATTGTGAAAGCTGATGAAGCAGTGGCAAATGAGCAAGCTATGGCTGCCAAAGCCATCAAAGATGAATGTGATGCTGACTTAGCTCAAGCAATGCCTTATTTAGAAGCTGCTCTGGCTGCTCTTGACACTCTAACTGCGCAG
Seq A exon
GTACATCTAACCGTATATATTTATGCACTAGAGAGGTATTTGGAGAAATACAAGCATTGAATATCTACTTTGCAGATTTTACATTATAGCAACTAAATTTTTTATAATTTGTAAGCTTTTGGGGATCTTTTGGTTTTAAAAAGAAAATATTACTGTATTTTGTAGCAAAAATACGATAAGGCTGTTTTCACGGACTACAGGATCAAATATTATACTACACATTTCAAAATTCATAGCTATAAATGTCTTTTGACTCAGCTTGCCAAGTTAGAAAAAATATATATACTTTTAACTTTCTCATTCAGAACTTTTCAACCTGTCAACTCATGTTTTTAAATCTAGTCTTTTGAAGTCCAGGAATTGAGATTCTATGTCTTCTCATGTTAAGGGAGTATGACATTGGAATTGGAGGCGGTCAACTTCTATTTTTATGGATATCCAGTTTTGCCGTGCCCACGGTGGGATGAAAGGAAGTTCCCCAGACTGTAAAAGCGAGGGTGGACTGTGTGCTTCTGTTGTTGTTAAAAACAAGATTTTCAAATACTTTCAAGGACATCTTACATGAAAGCAAATGTTTTGTTGTCTATAGCTACTGTTGTTATCAAAAGTTTTAGATTAGGTCATTGTCAGATCATTGGCATGGTTTGTGAAAATAGTAGACGACTTCTTAGTCACTTCAAGGCTATTGCATGTTTGTGAATAACAAAATGAGAATGTGGTTTTGAAGGCCAATTAAGTAATTCTTCAGCTTCTTTGAATGCCTAGTGAATCAAAAAAGATGTATTATAATAAAAGAGAATAAAAAAAGGAGTAGGAACTTCCAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAAATAAAAAATGCATGTAGGGAAGTTTATAGCACATATGCTGGGCTTTCTGATTCACTCTTAACTCCACTGACAGTAAACACTGCCCACAAACCCATGTGCGTAAATGCACATGTAACTACGTTTTTTAGAGAAACAGATTTATACTTAATTCAGTACTACAAAATTGGTATCGTTTTTTTCCATCGTTCATTTCATTAATGAAAATACTGTATTTCTGGAGCTAGAGTCTGCAGTTTCGGTAAACTCTTAATAGAGTGTGCTTGTCATCATACCAGGTACAAAGAGCATTACCATTTTGACTAGAATATCACATTACTCTTTTCAGAGAACAACAATTCTCTTGCTTTTCTTGCAGTTATTCTTACAGTTATCCTGTATAAATTTTCTTACACTTCATGTTGCTTTTAGTTGCAACTTAGTTTGCATTTAGTCTTTAAAATAGTATTTTACTCTACTTAAAACCCCCATCAATATTAAGTTAATTTGTATTTTGTCCTTAATTTTATTTCATGGAATTGCTAACTTTGGTCGCTTGTTCTTAGACTTCCTTCCCTGAAGTTCCTGTCAACCAGTGTTCTGACTGCCTCATTGAAATTCCCTGGCTTCATTTATCTGCTGTCCTTTCTCTCACTTGAACACTTGCATGGTTACACTTGTTCTTAAAACAAAGCTTAAAGCTCCATTAACTGTAGTTATTTTCTTTATACTTTCATCCAGTCTTATAATTTCTGTGTTTTTGTGACATGAGTAAACATTTCCAGAATGTAAAAGACAAGTCTTTCTATCCAAATTGCCAAGGTATTAGAACTCATAAACAAAACAAAACCTTGGGCAGACTGTCAAAATCTAGTACCAATTCACAAGATAATTTTAAGATTCTCAAAATCCATTAATGTTTAAGGTATGTATTTTCTGAGAAAGTCTGTTAGAAAGAATACTTGAATTTCCATGCGGAGTTACTCTTAGAGAAGGATGATCTTACATAAATCCTTAGTTTACTAACCTTCTGTTTAATTAGTTGTGTTTGCATGTGTAGAATTGTATTGTTCTTTTATGCTATGTTTACACATCTGTATTTTAAACATTGCTTAGTCATATTAGGAATTGGAAATTTTTCTTTTTGTGATGCAGTGTTTTTCTTAGTTGCTTCTTTCCTCCTTTAGTTCATTCTGGGGGAGCTTAATAAGTGACCTGAGTACTAATTGATTTAATTCTGTACTTGGAGAGCATTATGGTTGGAGACAGTTTTTACCATGTGTTATCCCAAATCTACTAATCCACTGCTGAATTGATTCTGTAAGTTTGGAAATACTGTGATAGAGCCTGAACTGAAGGTCAGCAGTGGAACATCTGAACTCCATAACTGAAGTGCGATGCCCACTGCTGATTTAGGAGCAGAAAATGGGTGTATAAAAATGAGTTACAGATAAGACTTTTTTTAATCCTCCAAATGGACTGTTAACTAGATTTCAGATCTTTTTGTTTAGAAGTCAGTGTTAATTTAAACTCCATAGCACTTTAAAGAGAGAAATAGAGTGGGGAGAAAAAAAAAAAAAGGAAATATATTTTTTTCAAAATGAAAGTGAACTATATATACGTATGAACTACACAAGCTTTGGTATCATAATATATTTCAAATTATCAAGTTTGAAAATAGTGGATGTACGTGGAAAAACATTATCTTGATAGAAAAAGGCCTATTATTTCTACTGTAACAGAGGAATTAATTCAAACCTATGTTCAGAGTTCTAAAAGTTTTTCTTTGTTTTGTTTTATGTGTTTGTATGTTTGTAAG
Seq C2 exon
GATATTACAGTGGTAAAGTCCATGAAGAGTCCTCCTGCTGGTGTCAAGCTTGTAATGGAAGCTATATGTATCCTTAAAGGTATCAAGGCAGATAGGATTCCTGATCCAACAGGTTCTGGAAGAAAAATTGAGGATTTCTGGGGTCCAGCCAAGAGACTTCTGGGTGACATAAGATTTCTTCAGTCTCTTCACGAATATGACAAGGATAACATTCCCCCGGCTTACATGGCTATCATAAGAAAACAGTATCTAACAAATCCTGAATTTGTACCAGATAAGATTCGAAATGCTTCCACAGCAGCAGAGGGTCTATGCAAATGGGTCATAGCCATGGATGTTTATGATAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007841:ENSGALT00000012727:29
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.017 A=NA C2=0.017
Domain overlap (PFAM):
C1:
PF127802=AAA_8=PD(5.7=12.7),PF127772=MT=PU(29.3=87.3)
A:
NA
C2:
PF127772=MT=FE(32.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]