BtaINT0050662 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016784 | DNAH7
Description
Bos taurus dynein, axonemal, heavy chain 7 (DNAH7), mRNA. [Source:RefSeq mRNA;Acc:NM_001143874]
Coordinates
chr2:84863654-84866766:-
Coord C1 exon
chr2:84866436-84866766
Coord A exon
chr2:84864001-84866435
Coord C2 exon
chr2:84863654-84864000
Length
2435 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
TTGCATGTTGTTATTTCAAGGAC
3' ss Score
7.12
Exon sequences
Seq C1 exon
TGAAGTCATGAAAATGAAAAAGAGGTATGAAGTGGGTTTGGATAAACTGGATTCTGCTGCATCTCAAGTAGCCACAATGCAATTCGAGTTAGAGGCTCTACATCCTCAGTTAAAAGTTGCTAGCAAAGAGGTTGATGAAATGATGTTGATCATTGAGAGGGAATCGGTAGAAGTTTCCAAAACTGAAAAAATCGTGAAAGCTGATGAAACAATAGCAAATGAACAAGCTATGGCTGCCAAAGCCATTAAAGATGAATGTGATGCTGACCTGGCGGGGGCTTTGCCCATATTAGAGTCAGCACTGACAGCCCTTGACACCCTCACTGCACAG
Seq A exon
GTAAGAGCACAGCTGTGGGCTTGCTGGGAGACCTGTTGGCATAACTTAAGGAAGTGCTTACCATTGTGTGCTGCAGTTTGGTCTGTCTTTCCAAAGTCTCCACGTTGAATGTGATTAAAATCATTTTCAAATTGGCCAAAAGATTCCCTAATTGACCTGGAAAAAGAAATGGACATGCAAGACTAAGACAGTTTTGAAAAGAAAGTTTCCAAATGTTCTAAACAACCATACAACAATCATTATTTCAGGAACTTTGCAGAGCAACTTTAATTGACAGGGGCATGAATATACACTTTTATTTTATGTACACTTTTTCATATTTAGAAACTTGTAGCTAGATATGCCTTACAGTATATATGGTAAGGTGGGGTGTCAGTGTTTGTCAGTGGGTTTTTTGTGTGTGTGATATATATGACAAGTTATGTATGATTTTTAATAATTTATAATAATTGTTAGTATAAAATTTATAATGTTATAAAATAAAACAAAATGTTTTGTTTTATAATAATATAGCTTTGACAGTATTAAAAATTAAAACATGAAAGGGAACATTTCATTTAAGAAAGATTAAGATGAATTTTGAAAAATAGCGTTGGCAATCTCAGCTAAACTTTTGCGTAAATTACTAGAAGATGGGACATCCCTTGTGGCTCAGCTGGTAAAGAATCCACCTGCAATTCAGGAGACCTGGGTTCAATCCTTGGGTTGGGAAGATTCCCTGGAGAAGGGAAAGGCTACCCACTCCAGTATTCTGGCCTGGAGAATTCCATGGACTTTATAGTCCATGGGGTGGTAAAGAGTTGGACACGACTGAATGACTTTCACATGCACACACGGGAGAGGATGTGTTAGATCTTTTCTTCACACCTTCCTCCAAAATAGGTTTCAGATAGAAATTTAAATATAAATAGTTATATTATATTATAAAATAGTATCAAATGTAGGTCAGATGTTAATAATTGTGGAATATAAACTAGGACTGAAGATTTCTTTGGTATAAGAGAAATCAGAGAAGAAAACACTAAGCAATATTGTTTGTAATATATGTGCTCTGGATACTCTCTTGTATTTTTCAAAAATAAGAGAATTTTTGTACCTAAAAATGTAATGGTACATTTTTGTACCTAAAAAAAGTAATGAATTTTAGTACCTAAAAATCAACACATTTTATTTCATATAAACACCACGGATAGAAGTTTAGAAACACTAAGGGAAAAAATCTTTCAACTGCATGGCAAATAAAATATTAATATACTTCTGTGTGTAAAGCTCTTACAAATCACTAAGGGAAAAAAGTAGCTCTAACATAATATAGTAAATGATATAAAGAAGTACCAATTCAAAAAGGAGGAAACACAAATAGTTAATAAGGGTATGAAAATACATCATATCTCACTTGTATTTAAAGTCTATACAGTTCATGGAATTCTCCAGGACAGAATACTGGAGTGGGTAGCCACTCCAGTAAAACCACTGGTGGTTTCTTTACCAGTTGAACCACCAGGGAAGCCTAAGGAATACTGGAGTAGGTAGCATGTCCCTTCTCCATCGGATCTTCCCAACCCAGGAACTGAACCAGGGTATCCTGAATTGCAGGTGGATTCTTTACCAGCTGAGCTACCAGGGAAGCCCCCAAAGAAATACAAATCAAAATAAAATTTCTTTTGCCTGATAGAATGCTTACCCGTGTTGTTAAGGGTATATGTAATAAAACAGGCACCCTTATATATTTTCTGCAGATCAGTTTGTCAATATTTGTCAAAAGCTTTAAAAAAAAATTAAGATTTTAATTGTAATAGTAAAAAAGAAAAAGGCATGGAGTGTTAGAATTATGGTTCATATCTATACATCAGAAAGCTATGCAGCATTAAAAATGATGTAAATGTTTACTAGCACAAGAGTATGTTTATTATATATTATTAAAATAGAACAGTTTAAAACAGCATGTATATTAGATATACTATGATTCCACCGGTTAAAATAGGGCAGATACACTGGTTTATAGCATATACACATGAAAAAGATGTAGAGAAATATAAAGTAAGATGTTTACAGGAGTTAACTATATGTGATTGGTTTTACAGGAGACATATGTACAGTTTCTCTATATTTCTCTGTTTGCATCTATAACTTGTATAGTTTTTAAGAAGCAGCAAAGCTCTTACTTTGGTACAGTCAATAAAAAGCTCTTTCATGTGTTCTTGAAGTGGATTTCATGTCGTGAGTGATCTCAGGGTATTTTCCCATTACTCTTTTTTATTTTTAACTTTGCCTTTGAGATCAACTTCTCAGCACTTCATGATACAATTCTATCACTGTCAGCAGTTTCTGACACTTCACTGTCAGTGAGTAGCGAGTTTCTATCTTATGGCTTAGTTTGAAAATAGGAACCACACAAGTCAATGTAAACAATTCTTGCATGTTGTTATTTCAAG
Seq C2 exon
GACATTACAGTGGTAAAATCCATGAAGAGTCCTCCCGCTGGTGTCAAGCTTGTAATGGAAGCTATATGCATCTTGAAAGGCATCAAAGCCGACAAAATCCCTGACCCAACAGGTACAGGGAAAAAGATTGAGGATTTCTGGGGTCCTGCCAAAAGACTTCTGGGTGACATTCGATTTCTGCAGTCACTTCATGAATATGACAAGGACAATATTCCTCCAGCTTACATGAACATCATAAGAAAAAATTATATTCCAAATCCAGATTTTGTTCCAGAAAAGATAAGAAATGCTTCCACAGCAGCCGAAGGTCTGTGCAAATGGGTCATAGCAATGGATTCATATGATAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016784:ENSBTAT00000038364:44
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127772=MT=PU(29.3=92.8)
A:
NA
C2:
PF127772=MT=FE(32.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]