RnoINT0049106 @ rn6
Intron Retention
Gene
ENSRNOG00000060984 | Dnah7
Description
dynein, axonemal, heavy chain 7 [Source:RGD Symbol;Acc:621798]
Coordinates
chr9:60196837-60198111:-
Coord C1 exon
chr9:60197781-60198111
Coord A exon
chr9:60197184-60197780
Coord C2 exon
chr9:60196837-60197183
Length
597 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
ACAAAACATTGTTTTTCAAGGAT
3' ss Score
5.29
Exon sequences
Seq C1 exon
CGAAGTGATGAAAATGAAAAGGAGATACGAGGTGGGTTTGGATAAACTGGACTCGGCTTCGTCTCAGGTGGCCACCATGCAGGGCGAGCTGGAGGCACTCCATCCTCAGTTAAAAGTTGCCAGCAGACAGGTTGATGACATGATGATAATGATTGAGAAGGAGTCCATTGAGGTTGCCAAAACTGAGAAGATCGTGAAAGCTGACGAGACAGTAGCAAACGACCAAGCCATGGCCGCCAAAGCCATTAAAGACGAATGCGATGCCGACTTGGCCGAAGCCCTACCCATCCTGGAGTCTGCGCTGGCTGCCCTTGATACCCTGACCGCGCAG
Seq A exon
GTGAGAGCTGTGCCCGGGGCTGAGGCTTTGCCATGGGGTACCACAGTTTAGTTTCTCTCAAGTTAGCATCCAAAGTTTACAAACATTTTTTTAATTGGCAAGAGAATTCCTTGGTTTACCTGAAAAAGATATTTGTTTTCAGGACAAAGGTATTTTTGAAAAGGGACAAAGCTGCCAGTTGACACCACTACCACTGCTACTACAACTATGACCATCATCACCCCCACAACCACGTCAGGAACTGCCGCCGCCGCCACCACTGCCACCACTGCCCCCACAAGCACCCCCACCGCCCCCACTAGTTTCACCTTCTCTTCTCCCCTTTCACCTTTCTCCATCATGGTGGTTCCTACCAGAGCCTTGTGCCACTCCCCCACTATAAGTTCCCACAATTATTCTTTTGTTGTTTTAAGATTCCCTCCCAATTGACTTGTCAACATTCTTGCCATGATTCTGCCATTTCTGCCCAACACAGAAAATTTCTGTATCTTAAGGTACCTTAAAGCCTAGTTTGAAAGATTGAACTTGTTAATATGACTACAGTGGATGTACAAGCAGACATTTATTTCTCTTAATAACAAAACATTGTTTTTCAAG
Seq C2 exon
GATATCACCGTTGTGAAGTCCATGAAGAGTCCCCCTGCTGGCGTCAAGCTTGTCATGGAAGCTATCTGCATATTGAAAGGGATCAAAGCTGACAAAATCCCTGACCCAACAGGTTCCGGGAAGAAAATTGAGGATTTCTGGGGCCCTGCTAAGAGACTTCTTGGTGACATAAGATTTCTTCAGTCACTTCATGAGTACGACAAGGACAATATTCCTCCTGCTTATATGAATATCATAAGGAAGAGCTATATCCCCAACCCAGACTTCGTTCCAGAAAAGATTCGGAATGCTTCAACAGCTGCTGAAGGTCTCTGCAAGTGGGTCATCGCCATGGACTCCTATGACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000060984:ENSRNOT00000092162:36
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127772=MT=PU(29.5=92.8)
A:
NA
C2:
PF127772=MT=FE(33.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTGCCAGCAGACAGGTTGAT
R:
TTTCTTCCCGGAACCTGTTGG
Band lengths:
342-939
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]