HsaINT0051496 @ hg38
Intron Retention
Gene
ENSG00000167130 | DOLPP1
Description
dolichyldiphosphatase 1 [Source:HGNC Symbol;Acc:HGNC:29565]
Coordinates
chr9:129081100-129084768:+
Coord C1 exon
chr9:129081100-129081207
Coord A exon
chr9:129081208-129084667
Coord C2 exon
chr9:129084668-129084768
Length
3460 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
3' ss Seq
TCTGTTCTCTGTCTTGCCAGGTG
3' ss Score
11.94
Exon sequences
Seq C1 exon
GGCTGCTCGAAGAAGCCCGGTCTCCGGGTAAGATGGCAGCGGACGGACAGTGCTCGCTCCCCGCTTCATGGCGGCCGGTGACCCTCACCCACGTCGAATATCCTGCAG
Seq A exon
GTAAAAGGCGGTCCCGGCTCCAAGGACGCCTTCCCAGGGACGGCCTCTCAGTCCCGGGCGCTCCGGCCTGCTCGAGCCCGCGGAGGGGGCGCCGGGGGACCGGGGTGGGAACTGTCAAATAGTGAACCACGGAGGGGCTCGGCCGGCGCGCGCGCCGCGCAGGCGCAGTGGTGCGAGGATGAGCTGGGCGAAATTGTGAGGCGCTCGCTCGCGCACTCTGCGGCTGCGCGGCCAGGGCGCTCCCCCGGGTCCCGGGGCGCCGGTGGGCTGAAATGGGTTGAGGATCTGTGTGAGGCGAGAAAAGATCCCTGGCCTGGACCTTGGCCCTTCTTCCCCGCCCTCCCCTGTCCCAGAGAGGCCGCACTCCTGTTCCAGCGTGCAGGGAGTGTCTTGTTTCCTTCGAACAGTGCTTTGGGCTGCTTGTAAGAGAAAGAGCTCCCCGTTGCTGGGAGTGTGCAAGCCGAAGCCAGGCTTTTGAGTACTTGTGGTGCCACGCCCTGAGCAGGGCACGATTCCACAACAGAGAGGACCCGATGAGGGGGCGGGCAGCCTCCGGGAACTTGACTTCTGTTGCTTCCCATCAGACACACCTCTCGAAGTGCAGGGCTTTCCAGTTGAGAGGTCCATTAGCGGCGTTCTGGAGGCTGTCTAGTAAGAGTGGCGCAGAGCCTGGGCGTGGGGGTCAGACCCATCTGGGCTCCAGTTGAGGCTGAGGCCTTGTGCAGGTGCCTGCCTCTGCTTAAGTTAATTCATCTCTAAAGTGGGACTGATTACAGTGCTTACCTTCTGGTGATGGTATGAGCATCAAATAGCAGGAGGCACAAGAAGGGCTGAGTACAGTGCCCGGCATGCAGTAAGCGTTCAGTAAATACCTGCAGTTAATGTTATCCCACCTTGCAAGACCCTCCCTGGGTAAGATGGTTGAGTGCCAGGGAAGGCTGGAGCCCCTCATTGAGCCCTGGTTGCCTGGGAAGGGCCTGCTCATGCTGCTGTCTTGCGAGATGTGAGAACCTGGGTCCGCTGAGGGCACCAGGACTGAATGCCAAAGAACGTTGACGCTGGTGTTCTGGGTTGTACTGGGGGTGGTATGGCCCTGCCAGGTCCTGGGCCCTGCCTGCCTGCCTGTCTACCATTCATTCATCCATTCATTCATTCAGTCAATATCCACTGAACACTTCTGAGTGCTAGGCCCTGGGCTAGCTCTGGTTTTTAGAATGCTTAACAGGCCTGAAATATCCCTGCATTCCTGCACTATGAAAACCAGCTGCTTTATAAGAGGAAAGCCAAAGCCTGGAGGTGGGGAAAGACTTGCTAAGGCCTCTGCACCTTCACAGCTTCCCCTCCTGGCCTCAGAGTAGCTTCTTGGAGTGCTCACAATCCAACAAGCCAGAAGGAACCTGGCAGGCAGTTGTGTGCAGCATGATACAGGCTGTGATGGACCTGGCTGAGCCTGGAGCATCTGGTGAGGTCTAGTCCCCTATTAATGCTTCCATGGTTCCCTGCACTTCTCCGTCACACCCCTCTTCACACCGTCACTTGCTTACTTCATTCATTCAACAGTTTTTGAGCCCAGTTAAGAGCCAGGCCCTGTGCTGGGCTTGGGGGATAGAGTGGGATATAAAGAGACCCTGTCTCTACTCCCAGATGCTGTCCTGATATCTACATTAGTGGATCATGAACTGAGTCTGGATGGCAGATTCTCCCGTCAGACCTCAAGCTCTGCACTAGCAGGGACATATGTGTCTTTTTTTTTGCCACTGTGGTGGGTTCTTAGTTGTTTGTTGAGTTCACCCAGAGAGCGTCCCAGGTGGGGGGAAACTGTGTGCAAAGGTCCAGAAGTAGGACAGGGCACGATGCGCTCAGGGAACTCGAGTTTGGTCCTTGGAACTGGAGCAGAGGTTGAGAGGGAAGCAGGGCCAGGACTGTGCAGGGCCAGATGAGCTGGGCTGAGGGGGAACTTGTCCTAAGGGCAGTGGGAGGCCTGAGGGGGCTTGGATCAGAGAGTAGAGAGGCCAGAGTCCCTGGTAGCATCTTCAGGAAAACCCCAGGGTAGTGCTGGCTCTGGGACAGGCTATGGAGATGGCTAAAGCTTTGGGGGTACCAGTCACTCACTATCTTCATAGCCCAGTGCTGTGAGGGTGAGCTTCATAGTGGAGAGGCCCAGGAAAGAGAAGGGACTCACCCACTGTCACCCAGTGGGACTGTGGCAGCACCAGCACTTGACCCCAGGCACTTAGCTGGGCTGCTCTGCTCTCCCAGACCAACTCCAGGCCAGTCTGATCCTGGGTAGGATGGGCTGGGTAGGATCCTGTGTGTGGATGAGACCGGGCATGTGTGTGTCTATGTCTTCAGCCCTGGAATCTGGGCTCAGCCCTCTGTGGACAACTTCCCTGCTGCTTGTGTGAGGCTGGTGGCATGGACCATTTCCCACACTGGGTTCTCTCCACCTCTGCCCCAACATGGAAGTGTCCTGGTTGCCAGGGACCAAGCTGGGTGTCTCACAGGTCCCATCTCATTGAGTCTCATGCAGCTGTAGGAGGTAGGCACTGATATCCCTATTCCACAAGTGGGTGAGCTGAGGCTTGAATCCTTGCCTCAGTTCATGCAGCCAGTGAGTGTGGGCATAGGAGCTGAACCATGCTCTCAGACCCCAGAGTGGCTACATAGCTGCCTGTCTCAAGTGGTGAGGGTGGCCTTCAGACTCAGCCTCCCCTGCCCTTGGATTCTCAGCTTGAGTGTCCCCATCTCCTAAAAGGGGCCAGTGTTCCTCTGCTGCCTCCATCCCAGGAGTGATGGGAGTGTCAGAAGCTGGTAATCAATAGGTAGGCAGTTTCCTGCCAGAGAAGTGGCGCGCAGCTGTTACCGTCGCCCTATTGGGCTTGGTTTCTGTCCGAGTCTTCAGTGTGGACCCAAGTCTGTGTGGTGTCCAGAGAACGTCGGATTTCCCTGGAGGCCCAGGGCTCAGCCAGGGCAGCCCCAGCACAACAGTGTGTGGCTCTCATGTGCCTGCCGGGCTGCCTCCCAGGTCCCAGGCTCCACCTCTGGAGTCACCAGGCCGGGTTCACCTTCCTGCTTTGGCAGGAGGGATTGGTCTAGTGTCTGGAACAGGTCAGAGACTTGGACTTTAGTCCTGGTCCCACCTCCTTCTGGCTGTGTGACCTTGGGCGAGTCACATAGTTGCTCTGGAATTCAGTTTCTTCATCTATAGAATGGGAACAGTGAAGGCACCTGCTTTAAACGCATGCTGTGTGCACTTTAGTGCTAAGTAGTAGACAGCATCACGTATGGCTGTGACTGAGTTGGCACAATCGGCCGGTAAACAGGTGTCCCTGGCTGCCTGGCCTCCATTCTCCAGGCCCTGCCGGGACCTCCTTTCTGGATCAGGCCTTACTTGTAGGGGGCTGGTCCCTCTTCTGATGCCTGTGCCCTGTCCTCCTGATTCTGTTCTCTGTCTTGCCAG
Seq C2 exon
GTGATCTCTCTGGCCACCTCCTTGCCTACCTGAGCCTCAGCCCTGTATTTGTCATCGTCGGTTTCGTGACCCTCATCATATTTAAGCGGGAGCTGCACACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167130:ENST00000372546:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.039 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0156916=PAP2=PU(0.8=2.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development