Special

MmuINT0052622 @ mm9

Intron Retention

Gene
ENSMUSG00000026856 | Dolpp1
Description
dolichyl pyrophosphate phosphatase 1 [Source:MGI Symbol;Acc:MGI:1914093]
Coordinates
chr2:30247936-30251279:+
Coord C1 exon
chr2:30247936-30248032
Coord A exon
chr2:30248033-30251178
Coord C2 exon
chr2:30251179-30251279
Length
3146 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
CTGTTCCTCTGTCCCCACAGGTG
3' ss Score
14.41
Exon sequences
Seq C1 exon
GAAGCCCGGTCTCCGGGTAAGATGGCAGCGGACGGACAGTGCTCGCTCCCCGCTTCATGGCGGCCAGTGACCCTCACCCACGTCGAATACCCTGCAG
Seq A exon
GTAAGAGCCTGCCCCGGCTCCGAGGACGTTCTCCTCGAGCTGCCGCCACAGCCCCGGGCGTTCCGGGCCGCGCGGACCGCCTTCGGGGCGCCTTGGAACCGCGGTGGGAACTGTCAAACAGCGAGCCTTGGAGGGGCTCGGCCGGCGCGCGCGCCGCGCAGGCGCAGTGAGGCGGCGATGAGCAGGGAGAAATTGCGAGCGGCTCGCTCGTGTGCTCTGCGGCTGCGCGGCCGAGTCGCTCTCCGGGGTCCCGGGGTGCTGGTGGGCTGTCCTGGGCCGGGGGAGGGTCTGGATAGGGCGGGCGAGGATCTGGGCCTGGACTTTGTCCCTTGTGCCCCGCCCTCCCCCGAGCCAGAGAGGCCGCACTCCTGCTCGGCTGTGCAGGGAGTGACAGTTTCCTTCACTACGCTGCGGGCTGCTCACTGGAGAAAGCTCCCAGTTGCAGGGAGTGTGCAAACCCAGGCCAGGTTTGGGAGAATTTGCGGCGCCACGCCCTGAGCAGCGCGGCAGAGGCCAGCCGCCAAGGGGGCATGCAGCCCCTGGGAGCCTGACTTGTAAGAGCTTCCATCTGACACGCCTCTGGGAGTGCCCGCCTCTCTGGTGGGAAGGTCCATTAGCCATGGTTCTGAAGTTCCGGCTCGGCTCCATAGAGTGGAGCGGAGCGGAGCTTAGGCCTTGGGGTGAGACGTTTCCGGGCTCCAGGGTAGGCACCACCCCTCCAGTCACTTCATCTTAAGTGGCTCCAAGTACAGTGTCTCCTTTCTGTAATGGTGTGTGACTCAAATGACCACAGGCCTAAGAGGTGCTGGGCACAGAGCCTGGCCCACAGTGGACACCCAGTAAATACCTGTAGTTTATCTCTCTAGCTTGCCAGCACCCTCCCTGGATAAATGTTTGTTGCTGAGCAGCCGGGGCCCCCTTGCTGGCCTCTGGTTGTCCAGGAAGGGCCTGTCCTCTTGGGTAGAGGGCCTGAGAACTTGGGTCTGCTGAGAACACAGGGCCACAGGCCAGGAGAACTTTGCCTCTGGGTGTTCTGGGTTATACTTAAGGTGTGGCAGTCCAGGGATGGGCCCTATCAAAGTGCCTGTTCATTACCCAACCACCCATCCATCCATTCATTCTGCATTCCCTTAGCATAGCATCTCCCGGGTGCAAGGCCCTGGGCCAGCTCGGGGTTTGGAATGATGAAGTCCCTGCACTCTTGTTCTATGGAAAGTCTCTGCCCCTGAGGAGGGAAAACAGGCCTGGTGAAGGGGAGAGACCTGACTGGGGTCTCCACAGCTTCCCGACTCTCCGTCCTTGGCGTCAGAGTAGCTTCTTGGAGGGCTCATGGCCTTTCAGGTGAGAAGAGCCTGCAGCTGTGAACACCATAACACATACAAGGCTGTGTGTGCTGTGGGGGCTGGTTGAGCCCGAGGATATCTGGCAAGGTACCCCTGCACTTGATGTCGCTCACTACACTGAACATGCTTCCTTCATGCCTGAGTCCTGTGGCGTGTCCTACATTGCTACACTCAAGACAGTAGGTTATGGAGACCTTGTCACTACCCTAAAGTACAGAGGGCAAAGAGAGGCCCCACACAGCTACTTACACTAGCCAGTGGGTCACCATGTCCCAGTCACACATCTCAGCAGGCTCTCACCCTTGTGATTGTGGCTGTGCTGCCTCTTAGCTTTTGTTTTTTGAGTTCACCTAGGCAGCATCCTAGGTGGGGGAAGCCACGTGTGTATGTATGGGTCCAGAAGTAGGACAGCACAGTGTGTTCAGGGAGCTGCAGTAATGTCCCTGCAACTGGAGCAGAGGGTGGGAGGGAAGTGGGCCAGGTCTGCACAGACTCTAGTAAGCAGGCCTAAGGAAGCATATCCCAAGGGCAGGGGAGGTGTGGGGCATAGAGAGAGCTGTGGTTAGAAGCCCTGGCCTCAGGAAAGCCTGAGGGTCTTATCTGCTGTAAGACAACCTGAGGAATTGGTCAGAGGTTTAGGGACCCTAGCTGCTGTTCCCTGTTCCCATAGCCCAGCAGTTATCAGTTGAACTGTGACAGAGTCCGGATCTCAGGGATGGGAAGGCATGGATTCAGAGAAGGGCACTCATGCAAAGTTACTTAGAAGGATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAGAATCAACATTTGAACCTAGGTTTCTGGCCAACTCTTAAGTCAGTCTTTCCTGATAAGGCCAGATAAAGTATATATGAATCTGTCCCTTAAGGCTTGGAATCTGCTCTCTACCCTCAGTTGGGTGTATGCCTGCTTGTGTAAAGCCAGACTGCTGGTGTAGGCCATTTCCCATACTGGGTTCACCCAGTCTCTGATCACCACTGTACGAGTGGCCTGTGTGCCAGAGACCTTTGCCAGGCATTTGCCATCACTCCTACACAGTTCTGGAGAAGATACATCCCAAAGGAAAGGTTGGGGAGGTTTAGGGAGGCAGACTTGCCTTAGTTCCTGCAAGCAACTCAAGCTGCTACGGGAAGTGAATGATGGCACCTGGCCTTAGAGTAGCTTTTTAGTCTGTCACGTTGTTTCAGTGGTGAGAGTGGCCTTTGGATGCAGCCTTGCCTGTCCAAAGACATACCTCTGATCTTAGCCTCTGGCTCTCCGAGAGGCCAGTGGTCCTCACTGGCTCCGTCCAGGCTTTGGCAGGAGAGGAAGCACAGTGCCTTGCCTGTGGAGAAGCTTTGAGAAACTGCTGGCTGTTGTGGGTGGCCCCGCTAGAGTCTCCAGTGTCCCTCTATCTCCGGTGTCTGGGAGAGCACAGGCTTCACCAGAGGCCCCAGCCCCACGCTAGACCAGACCTTGGGGTTCAGGCTTCCCCTCTGACAGAGTGATGCATCCAGCCAGGTCCCATGTCTCTCTGATTGTGTAACTTGAACAAGTCACATAGCCATGCTGAGACTCACTTCCTTCTGTAAAATGGGGACAGACACCTTCTTGAAATTCATGGTGTGTGGATCCCTTATAGCTGTGGGGAGTTGGAATGTCCATGGCTGTGGCCCTGAGCTCTAGGACTTCCCCTTTTGTTTAAGCCCTGTTGACTTTCAAGGGGCTGAGAGCCCTTTTCTGACCCCATGCCCTGTCTCACGCTGTTCCTCTGTCCCCACAG
Seq C2 exon
GTGATCTGTCTGGCCACCTCCTGGCCTACCTGAGCCTCAGCCCTATTTTTGTCGTTGTTGGTTTTTTGACTCTCATCATATTCAAGCGGGAGCTACACACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026856-Dolpp1:NM_020329:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact





	

	
ORF disruption upon sequence inclusion (1st CDS intron)





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.000 A=NA C2=0.000
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
NO

							
A:
NA

							
C2:
PF0156916=PAP2=PU(0.8=2.9)

						

					

				








    
Main Inclusion Isoform:
NA





     
                   









    
Main Skipping Isoform:
ENSMUSP00000028209





     
      









    
Other Inclusion Isoforms:
NA
          









    
Other Skipping Isoforms:
ENSMUSP00000109242, ENSMUSP00000115602, ENSMUSP00000116276
  



Associated events






Other assemblies


mm10




Conservation


Human
(hg38)
chr9:129081208-129084667 
LOW PSI
HsaINT0051496
(DOLPP1)
Human
(hg19)
chr9:131843487-131846946 
LOW PSI
HsaINT0051496
(DOLPP1)
Rat
(rn6)
chr3:8958407-8961460 
LOW PSI
RnoINT0050547
(Dolpp1)
Cow
(bosTau6)
chr11:99563997-99567880 
ALTERNATIVE
BtaINT0052102
(DOLPP1)
Chicken
(galGal4)
chr17:5478013-5484125 
ALTERNATIVE
GgaINT1011792
(DOLPP1)
Chicken
(galGal3)
chr17:6033404-6039516 
GgaINT0124673
(DOLPP1)
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
No suggested primer sequences

				
R: 
No suggested primer sequences

				
Band lengths: 

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






Retrieved from "https://vastdb.crg.eu/wiki/Special:VastDB"